BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0296500 Os11g0296500|AK069633
         (412 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0296500  Zinc finger, CCHC-type domain containing protein    862   0.0  
Os09g0257766  Zinc finger, CCHC-type domain containing protein    142   5e-34

>Os11g0296500 Zinc finger, CCHC-type domain containing protein
          Length = 412

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/412 (100%), Positives = 412/412 (100%)

Query: 1   MENTQFSRPKAVPYNDSWEIPNSDYILLYLNDKQTGKITCMVCGKEGHYTCECPMKNKEK 60
           MENTQFSRPKAVPYNDSWEIPNSDYILLYLNDKQTGKITCMVCGKEGHYTCECPMKNKEK
Sbjct: 1   MENTQFSRPKAVPYNDSWEIPNSDYILLYLNDKQTGKITCMVCGKEGHYTCECPMKNKEK 60

Query: 61  YVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLGRCPMG 120
           YVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLGRCPMG
Sbjct: 61  YVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLGRCPMG 120

Query: 121 KITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITLTRELE 180
           KITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITLTRELE
Sbjct: 121 KITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITLTRELE 180

Query: 181 PYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAPNQSLG 240
           PYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAPNQSLG
Sbjct: 181 PYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAPNQSLG 240

Query: 241 VTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNLTGVTCFDCGDRGHFSYTCPQ 300
           VTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNLTGVTCFDCGDRGHFSYTCPQ
Sbjct: 241 VTCFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDKTPNLTGVTCFDCGDRGHFSYTCPQ 300

Query: 301 NLLEVMLTAELEPHDDTYERQPKADNGTVPTVLSLNCGEASHCGRNNPMKSLESSSDKIN 360
           NLLEVMLTAELEPHDDTYERQPKADNGTVPTVLSLNCGEASHCGRNNPMKSLESSSDKIN
Sbjct: 301 NLLEVMLTAELEPHDDTYERQPKADNGTVPTVLSLNCGEASHCGRNNPMKSLESSSDKIN 360

Query: 361 STAMTYKAPKRVLGVICFNCHEEGHYANRCPQKQQGINSGTSQSPIKRQRKE 412
           STAMTYKAPKRVLGVICFNCHEEGHYANRCPQKQQGINSGTSQSPIKRQRKE
Sbjct: 361 STAMTYKAPKRVLGVICFNCHEEGHYANRCPQKQQGINSGTSQSPIKRQRKE 412



>Os09g0257766 Zinc finger, CCHC-type domain containing protein
          Length = 346

 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 56  KNKEKYVICTLCGKVGHCHLWCCHQNESERRACRRCGEKGHYDNWHHLGCSSCEKHHPLG 115
           K+  K  +CTLC +     L  C +N+    AC RCGE GH  + H + CSSCE+ H LG
Sbjct: 121 KDHTKDGVCTLCSQGYRYELMWCPRNKPRNCACARCGEIGHSASEHEISCSSCEQSHLLG 180

Query: 116 RCPMGKITCFLCEGNGHVPVQCHLSPMLTAITQNQRESFRATLRQALRETSNTAVTPITL 175
            CPM K+TC+LCEG+ HVP++C LS +LT +TQ+QRE+++  ++Q + ET+   VTP+  
Sbjct: 181 ECPMSKLTCYLCEGDDHVPIKCPLSSILTTVTQHQREAYQEVIQQVIGETNKIIVTPVKK 240

Query: 176 TRELEPYNDKNGGQPKGDNEMVPRVLGFNQGEEGHSALRNPNRCHVPSSDKANVAADKAP 235
            RE++  +     Q K  +E   +V     GE+G +A             K      KA 
Sbjct: 241 FREVD--DSSLQYQCKRGSESASKVACSACGEQGEAASYKA---------KCMSKTRKAS 289

Query: 236 NQSLGVTCFNCGGKGHYSNKCPQKQKQHGVRST--NAAAMKDKTPNLTG 282
           +++  V CF+C   GH++N+CP + +      T   A   K  TP   G
Sbjct: 290 SKTKNVVCFSCNEMGHFANRCPLRHQTPAQDKTIPKAILTKRTTPTTGG 338



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,160,693
Number of extensions: 736906
Number of successful extensions: 5176
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)