Os11g0296500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCHC-type domain containing protein.
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Os11g0296500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.72 | 0.318 | 8.48 | -0.209 | 0.0464 | 0.619 | 0.49 | -0.719 | 0.137 | 18.8 | 29.59 | 44 | -- | -- |
| 46.15 | 0.316 | 8.47 | -0.208 | 0.165 | 0.736 | 0.601 | -- | 0.143 | 14.3 | 28.31 | 46 | -- | -- |
| 46.22 | 0.317 | 8.47 | -0.195 | 0.055 | 0.633 | -- | -0.707 | 0.139 | 17.4 | 29.97 | 46 | -- | -- |
| 47.5 | 0.321 | 8.47 | -0.19 | 0.187 | 0.751 | -- | -- | 0.148 | 13.5 | 27.84 | 43 | -- | -- |
| 46.43 | 0.317 | 8.47 | -0.211 | -- | 0.624 | -- | -0.635 | 0.136 | -- | 29.87 | 45 | -- | -- |
| 56.34 | 0.352 | 8.49 | -0.233 | 0.497 | -- | -0.39 | -- | 0.0995 | 0.00147 | -- | -- | -- | -- |
| 56.98 | 0.353 | 8.49 | -0.217 | 0.499 | -- | -- | -- | 0.102 | 23.9 | -- | -- | -- | -- |
| 48.1 | 0.324 | 8.48 | -0.191 | -- | 0.59 | -- | -- | 0.103 | -- | 27.84 | 43 | -- | -- |
| 48.42 | 0.324 | 8.46 | -- | 0.206 | 0.766 | -- | -- | 0.168 | 13.5 | 27.5 | 46 | -- | -- |
| 72.66 | 0.398 | 8.48 | -0.202 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 58.22 | 0.357 | 8.49 | -- | 0.496 | -- | -- | -- | 0.126 | 23.8 | -- | -- | -- | -- |
| 49.06 | 0.327 | 8.48 | -- | -- | 0.589 | -- | -- | 0.124 | -- | 27.5 | 46 | -- | -- |
| 73.73 | 0.401 | 8.48 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 2 | 42.48 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 4 | 42.53 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 13 | 43.17 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 16 | 43.29 | radiation | 20.0 | 30 | < th | dose dependent | sin | 22 | NA |
| 32 | 43.75 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 33 | 43.83 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 48 | 44.13 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 49 | 44.14 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 63 | 44.30 | radiation | 10.0 | 10 | > th | dose independent | sin | 22 | NA |
| 88 | 44.59 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 96 | 44.64 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 106 | 44.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 120 | 44.81 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 131 | 44.89 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 199 | 45.23 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 203 | 45.24 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 209 | 45.27 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 216 | 45.29 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 220 | 45.30 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 224 | 45.31 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 227 | 45.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 250 | 45.36 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 287 | 45.56 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 329 | 45.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 340 | 45.70 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 345 | 45.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 358 | 45.76 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 388 | 45.81 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 427 | 45.87 | radiation | 10.0 | 10 | > th | dose independent | no | NA | NA |
| 516 | 45.90 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 517 | 45.90 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 518 | 45.90 | radiation | 10.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 522 | 45.91 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 524 | 45.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 542 | 45.95 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 555 | 45.97 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 556 | 45.98 | radiation | 10.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 563 | 45.99 | radiation | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 566 | 46.00 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 581 | 46.03 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 14 | 21 |
| 608 | 46.06 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 631 | 46.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 16 |
| 661 | 46.15 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 663 | 46.16 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 707 | 46.23 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 811 | 46.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 814 | 46.35 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 830 | 46.40 | humidity | 90.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 837 | 46.41 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 846 | 46.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 854 | 46.44 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 20 |
| 890 | 46.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 9 |
| 896 | 46.48 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 898 | 46.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 924 | 46.54 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 9 |
| 943 | 46.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 948 | 46.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 968 | 46.60 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 991 | 46.63 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 22 |