BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0272900 Os11g0272900|AK068971
(132 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0272900 Zinc finger, SWIM-type domain containing protein 279 4e-76
Os06g0517100 97 5e-21
Os12g0287550 96 5e-21
Os11g0295666 95 1e-20
Os10g0156800 89 1e-18
Os02g0248400 74 4e-14
Os03g0614300 66 6e-12
>Os11g0272900 Zinc finger, SWIM-type domain containing protein
Length = 132
Score = 279 bits (713), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MVRQFERTRGRNTLSKLLLMWSLGCMNASAKRGYTQCEPVLSTRYAFEEQLSKLYTRAVF 60
MVRQFERTRGRNTLSKLLLMWSLGCMNASAKRGYTQCEPVLSTRYAFEEQLSKLYTRAVF
Sbjct: 1 MVRQFERTRGRNTLSKLLLMWSLGCMNASAKRGYTQCEPVLSTRYAFEEQLSKLYTRAVF 60
Query: 61 TLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTADVESGLYECECKT 120
TLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTADVESGLYECECKT
Sbjct: 61 TLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTADVESGLYECECKT 120
Query: 121 WIHTGLFCPHIV 132
WIHTGLFCPHIV
Sbjct: 121 WIHTGLFCPHIV 132
>Os06g0517100
Length = 526
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 64/95 (67%)
Query: 38 EPVLSTRYAFEEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNP 97
+P+L+ R+ F Q+S+LYTRA F LF+E L DST +++ + ++V+H K K+
Sbjct: 382 KPMLAVRWPFVIQMSRLYTRAAFRLFEEALQDSTDLRISQDHDFRNGWIVSHTKRSEKHD 441
Query: 98 WSQHAFQVTADVESGLYECECKTWIHTGLFCPHIV 132
W Q F++ ADV++G++ CECK W HT +FC H++
Sbjct: 442 WCQKQFKLIADVDAGVFTCECKQWEHTCMFCTHML 476
>Os12g0287550
Length = 262
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 39 PVLSTRYAFEEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPW 98
P + T + F EQLS++YTRAVF +F+ TL +S F + + ++++H K K+ W
Sbjct: 54 PNVKTAWPFAEQLSRVYTRAVFKVFENTLDESVHFRIEQYGVDQTQWIISHSKRSEKHDW 113
Query: 99 SQHAFQVTADVESGLYECECKTWIHTGLFCPHIV 132
Q F+VTADV +G + CEC W HTGLFCPH++
Sbjct: 114 CQRQFKVTADVVNGQFICECMQWEHTGLFCPHLL 147
>Os11g0295666
Length = 360
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%)
Query: 38 EPVLSTRYAFEEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNP 97
+PVL+ + F Q+S+LYTRA F LF++ L DST F + + N ++V+H K K+
Sbjct: 108 KPVLAVWWPFVIQMSRLYTRAAFRLFEDALQDSTDFRITQDDNFRNGWLVSHTKLSEKHN 167
Query: 98 WSQHAFQVTADVESGLYECECKTWIHTGLFCPHI 131
W Q F++ ADV+ G++ CECK W H G+FC H+
Sbjct: 168 WCQKQFKLIADVDEGVFTCECKKWEHIGMFCTHM 201
>Os10g0156800
Length = 255
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 40 VLSTRYAFEEQLSKLYTRAVFTLFKETLFDSTAFLVNEVSNAMGAYVVTHGKTIRKNPWS 99
VL+ R+ F Q+S+LYTRA F LF+E L DST F + + N ++V+H K K+ W
Sbjct: 78 VLAVRWPFVIQMSRLYTRAAFRLFEEALQDSTDFRITQDDNFCNGWLVSHTKRSEKHNWC 137
Query: 100 QHAFQVTADVESGLYECECKTWIHTGLF 127
Q F++ ADV++G++ CECK W HT F
Sbjct: 138 QKQFKLIADVDAGVFTCECKQWEHTANF 165
>Os02g0248400
Length = 275
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 72 AFLVNEVSNAMGAYVVTHGKTIRKNPWSQHAFQVTADVESGLYECECKTWIHTGLFCP 129
A +NEVS AMGAY+VTHGK N WSQHAFQVTAD+ESGLYECE T L P
Sbjct: 100 ATRLNEVSGAMGAYMVTHGK----NLWSQHAFQVTADLESGLYECEPPTCCEGALPSP 153
>Os03g0614300
Length = 691
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 22/102 (21%)
Query: 51 LSKLYTRAVFTLFKETLFDSTAFLVNEVSN--------------------AMGAYVVTHG 90
+S+LYTRA F LF+E L DST F + + N +M +
Sbjct: 462 MSRLYTRAAFRLFEEVLQDSTDFRITQDDNFRNGLKYHHVVDNRVVFLLESMPGEIKDSA 521
Query: 91 KTIRKNPWSQHAFQVTADVESGLYECECKTWIHTGLFCPHIV 132
+ + P Q F+V ADV+ G++ C+CK W HTG+FC H++
Sbjct: 522 RFLSLVPQKQ--FKVIADVDEGVFTCKCKQWEHTGMFCTHML 561
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,890,038
Number of extensions: 122325
Number of successful extensions: 559
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 7
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)