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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0272900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.0914) R2 : 0.334
β1 : -3.25 (0.235) R2dD : 2.53 R2D : -10
β2 : -- (--) R2dC : -- R2C : --
β3 : 615 (40.8) R2dE : 3310 R2E : -3310
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1500 (99.1) R2dD*E : 3300 R2D*E : -3290
γ1 : -0.0194 (0.0464) R2dN8 : 0.000344 R2N8 : -7.28
σ : 0.406
deviance : 76.12
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 49.84
memory length : 91
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 0.997

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.14 0.404 4.47 -3.26 0.0941 615 -0.355 -1500 -0.0239 2.34 50 90 13 1
112.81 0.498 3.13 0.0642 0.0203 -0.292 -0.497 -- -0.0363 0.866 50 90 13 1
75.46 0.405 4.46 -3.25 0.111 615 -- -1500 -0.0225 4.17 49.95 91 13 1
113.58 0.5 3.12 0.0776 0.0646 -0.318 -- -- -0.0353 5.4 51 58 14.2 2.18
76.12 0.406 4.46 -3.25 -- 615 -- -1500 -0.0194 -- 49.84 91 13 0.997
112.9 0.498 3.13 0.0603 0.0223 -- -0.484 -- -0.0359 0.849 -- -- -- --
113.68 0.499 3.12 0.0767 0.0675 -- -- -- -0.0346 5.36 -- -- -- --
112.32 0.494 3.13 0.0672 -- -0.142 -- -- 0.024 -- 106.1 41 14.3 5.52
95.5 0.458 3.12 -- 0.112 3.05 -- -- -0.0271 4.16 53 12 12.9 2.88
113.92 0.499 3.12 0.079 -- -- -- -- -0.0329 -- -- -- -- --
113.84 0.499 3.13 -- 0.0688 -- -- -- -0.0431 5.32 -- -- -- --
96.18 0.458 3.12 -- -- 3 -- -- -0.0249 -- 53 12 12.9 2.88
114.09 0.499 3.13 -- -- -- -- -- -0.0417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.14 humidity 50 90 < th dose independent rect. 13 1
3 75.14 humidity 50 90 < th dose dependent rect. 13 1
5 75.20 atmosphere 1000 90 < th dose independent rect. 12 1
6 75.20 atmosphere 1000 90 < th dose dependent rect. 12 2
7 75.21 atmosphere 1000 30 < th dose dependent rect. 8 7
69 85.70 temperature 30 30 > th dose dependent rect. 13 1
77 86.02 atmosphere 1000 270 < th dose independent rect. 9 5
126 88.90 atmosphere 1000 270 < th dose dependent rect. 9 2
141 89.68 atmosphere 1000 10 < th dose dependent sin 1 NA
164 90.75 atmosphere 1000 10 < th dose dependent rect. 2 13
174 91.18 atmosphere 1000 720 < th dose dependent rect. 7 2
311 94.23 atmosphere 1000 720 < th dose independent rect. 3 7
392 94.73 atmosphere 1000 720 < th dose independent rect. 5 4
412 94.87 atmosphere 1000 720 < th dose independent rect. 2 11
455 95.48 atmosphere 1000 720 < th dose dependent sin 6 NA
495 95.66 atmosphere 1000 720 > th dose independent rect. 3 8
519 95.89 temperature 30 270 > th dose dependent rect. 9 5
678 97.19 temperature 30 270 > th dose dependent sin 8 NA
738 97.56 atmosphere 1000 270 < th dose independent sin 2 NA
744 97.65 temperature 30 30 > th dose independent rect. 13 1
753 97.74 atmosphere 1000 270 > th dose independent sin 2 NA
819 98.21 temperature 30 270 > th dose dependent rect. 10 1
1000 99.54 atmosphere 1000 720 < th dose independent sin 7 NA