BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0269700 Os11g0269700|AK071998
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0269700  Conserved hypothetical protein                      305   8e-84
Os04g0304850                                                       75   3e-14

>Os11g0269700 Conserved hypothetical protein
          Length = 169

 Score =  305 bits (782), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 150/169 (88%), Positives = 150/169 (88%)

Query: 1   MFIANECQGGTAAPPNFDHGAIAELYSTHDTSVEISKRRTYACHVVCSPCVQKPISCSLT 60
           MFIANECQGGTAAPPNFDHGAIAELYSTHDTSVEISKRRTYACHVVCSPCVQKPISCSLT
Sbjct: 1   MFIANECQGGTAAPPNFDHGAIAELYSTHDTSVEISKRRTYACHVVCSPCVQKPISCSLT 60

Query: 61  ITIVIHDHLFLSEMHLLCCSIRSRFPGKQHAHHLGHEQSRXXXXXXXXXXXXXXXXXXXN 120
           ITIVIHDHLFLSEMHLLCCSIRSRFPGKQHAHHLGHEQSR                   N
Sbjct: 61  ITIVIHDHLFLSEMHLLCCSIRSRFPGKQHAHHLGHEQSRLLLGLCQVHLHLTLVLVFLN 120

Query: 121 DITRNIISSNDAEILLVYYGYRVHPQAHGYTIVAFHPRVFQGYRIYFIP 169
           DITRNIISSNDAEILLVYYGYRVHPQAHGYTIVAFHPRVFQGYRIYFIP
Sbjct: 121 DITRNIISSNDAEILLVYYGYRVHPQAHGYTIVAFHPRVFQGYRIYFIP 169



>Os04g0304850 
          Length = 142

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 40/49 (81%), Gaps = 2/49 (4%)

Query: 120 NDITRNIISSNDAEILLVYYGYRVHPQAHGYTIVAFHPRVFQGYRIYFI 168
           NDITRNII SN A+ILLVYYGYRVHPQAHGYTIVAFH    +G  I FI
Sbjct: 89  NDITRNIIPSNGAKILLVYYGYRVHPQAHGYTIVAFHREYSKG--IVFI 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,457,836
Number of extensions: 177526
Number of successful extensions: 421
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)