BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0266800 Os11g0266800|AK121586
         (900 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0266800  Tetratricopeptide region domain containing pro...  1668   0.0  

>Os11g0266800 Tetratricopeptide region domain containing protein
          Length = 900

 Score = 1668 bits (4319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/851 (95%), Positives = 810/851 (95%)

Query: 50  MQCVEMAERSAPDAGVHDYXXXXXXXXXXXXXXXXXXDASSKKPRQDGLSEVEAATVFDQ 109
           MQCVEMAERSAPDAGVHDY                  DASSKKPRQDGLSEVEAATVFDQ
Sbjct: 50  MQCVEMAERSAPDAGVHDYEALAARKRKALAEERTERDASSKKPRQDGLSEVEAATVFDQ 109

Query: 110 LMEGFXXXXXXXXXXXXXXXXXXXXXXXYSPEVTKKLGDATLLFTESRFKEAIPILHEVV 169
           LMEGF                       YSPEVTKKLGDATLLFTESRFKEAIPILHEVV
Sbjct: 110 LMEGFGLRRKRRSKDARKRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEAIPILHEVV 169

Query: 170 RIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALA 229
           RIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALA
Sbjct: 170 RIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALA 229

Query: 230 RHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYR 289
           RHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYR
Sbjct: 230 RHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYR 289

Query: 290 DCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHN 349
           DCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHN
Sbjct: 290 DCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHN 349

Query: 350 LPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKF 409
           LPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKF
Sbjct: 350 LPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKF 409

Query: 410 YLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDV 469
           YLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDV
Sbjct: 410 YLMIEDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDV 469

Query: 470 DKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPIL 529
           DKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPIL
Sbjct: 470 DKSDEAIVLLSPPNNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPIL 529

Query: 530 ETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKL 589
           ETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKL
Sbjct: 530 ETLNIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKL 589

Query: 590 LEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVINR 649
           LEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVINR
Sbjct: 590 LEKRAASNEDTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLALLHRYWEALQVINR 649

Query: 650 TLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTS 709
           TLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTS
Sbjct: 650 TLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPYSLAAWNSYYKVTS 709

Query: 710 RIEDRFSRHHKFLLRTREEKTDCVPPIIISGHRFTAISQHQSAARDYLEAYKLNPENPFI 769
           RIEDRFSRHHKFLLRTREEKTDCVPPIIISGHRFTAISQHQSAARDYLEAYKLNPENPFI
Sbjct: 710 RIEDRFSRHHKFLLRTREEKTDCVPPIIISGHRFTAISQHQSAARDYLEAYKLNPENPFI 769

Query: 770 NLCVGSALINLALGFRLQNKNQCIVQALAFLFRYLRLCDNSQEALYNIARAYHHVGLNTL 829
           NLCVGSALINLALGFRLQNKNQCIVQALAFLFRYLRLCDNSQEALYNIARAYHHVGLNTL
Sbjct: 770 NLCVGSALINLALGFRLQNKNQCIVQALAFLFRYLRLCDNSQEALYNIARAYHHVGLNTL 829

Query: 830 AAIYYEKALAVEVKDYPIPRLPYEENSCAQQDLKPGYCDVRREAAFNLHLIYKKSGADDL 889
           AAIYYEKALAVEVKDYPIPRLPYEENSCAQQDLKPGYCDVRREAAFNLHLIYKKSGADDL
Sbjct: 830 AAIYYEKALAVEVKDYPIPRLPYEENSCAQQDLKPGYCDVRREAAFNLHLIYKKSGADDL 889

Query: 890 ARRILRTYCTI 900
           ARRILRTYCTI
Sbjct: 890 ARRILRTYCTI 900



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,662,359
Number of extensions: 994053
Number of successful extensions: 2688
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2682
Number of HSP's successfully gapped: 1
Length of query: 900
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 790
Effective length of database: 11,292,261
Effective search space: 8920886190
Effective search space used: 8920886190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)