BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0245500 Os11g0245500|AK063483
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0245500  Lipid-binding START domain containing protein       383   e-107

>Os11g0245500 Lipid-binding START domain containing protein
          Length = 270

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/247 (80%), Positives = 199/247 (80%)

Query: 24  EDSLKRYVSYASESCIQELLAAXXXXXXXXXXXXXWKVLAYCNGVEISKRRAGAAHVFRS 83
           EDSLKRYVSYASESCIQELLAA             WKVLAYCNGVEISKRRAGAAHVFRS
Sbjct: 24  EDSLKRYVSYASESCIQELLAASDSGGGGGGGDDGWKVLAYCNGVEISKRRAGAAHVFRS 83

Query: 84  RWLLHAVSPGKFMAVANAVDAAKQWESDLVDARYIRELGDDLSIVHLKLGADASKRTAGL 143
           RWLLHAVSPGKFMAVANAVDAAKQWESDLVDARYIRELGDDLSIVHLKLGADASKRTAGL
Sbjct: 84  RWLLHAVSPGKFMAVANAVDAAKQWESDLVDARYIRELGDDLSIVHLKLGADASKRTAGL 143

Query: 144 FRRRDVVVYERRQTMDDGTLVVAVASLPKEIXXXXXXXXXXXXXXXXXXXXXXXWVVEKL 203
           FRRRDVVVYERRQTMDDGTLVVAVASLPKEI                       WVVEKL
Sbjct: 144 FRRRDVVVYERRQTMDDGTLVVAVASLPKEIAAGLLPPGSSSGARGAGLLLQSGWVVEKL 203

Query: 204 DAXXXXXXXXXXXXTYVVQLDPAAGWLPRCFVSRLNSKLVIMIVAKLKKMALATMHSAAA 263
           DA            TYVVQLDPAAGWLPRCFVSRLNSKLVIMIVAKLKKMALATMHSAAA
Sbjct: 204 DAGDGGDGPPCCVVTYVVQLDPAAGWLPRCFVSRLNSKLVIMIVAKLKKMALATMHSAAA 263

Query: 264 DDGEVMP 270
           DDGEVMP
Sbjct: 264 DDGEVMP 270



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,271,200
Number of extensions: 201077
Number of successful extensions: 353
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)