BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0244600 Os11g0244600|AK105539
         (395 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0244600  Epsin, N-terminal domain containing protein         418   e-117

>Os11g0244600 Epsin, N-terminal domain containing protein
          Length = 395

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/395 (57%), Positives = 229/395 (57%)

Query: 1   LGSLMDHSNSKXXXXXXXXXXXXXVPDRALLADIEAAVERCTAGGGGGDDERHVHEILFL 60
           LGSLMDHSNSK             VPDRALLADIEAAVERCTAGGGGGDDERHVHEILFL
Sbjct: 1   LGSLMDHSNSKASSAATPTAAAAPVPDRALLADIEAAVERCTAGGGGGDDERHVHEILFL 60

Query: 61  VSNAPGAITFLSRRITXXXXXXXXXXXXXXXXXXXXXXXXXXGDRYFEQDLRGLWASRDL 120
           VSNAPGAITFLSRRIT                          GDRYFEQDLRGLWASRDL
Sbjct: 61  VSNAPGAITFLSRRITARLEAARAPPAAALRSLLLVHRLLRAGDRYFEQDLRGLWASRDL 120

Query: 121 RIDAPRCSCSPHXXXXXXXXXXXXXXXXCSFLHGYSAYLEERMQWAINQSGNLXXXXXXX 180
           RIDAPRCSCSPH                CSFLHGYSAYLEERMQWAINQSGNL       
Sbjct: 121 RIDAPRCSCSPHAGGGGGSGEYATATGTCSFLHGYSAYLEERMQWAINQSGNLEPTRPRP 180

Query: 181 XXXXXXXXXXXXXXXXXXXLVFKLAMSQRLLDLAIQLLPDNNXXXXXXXXXXXFGIVLRE 240
                              LVFKLAMSQRLLDLAIQLLPDNN           FGIVLRE
Sbjct: 181 PPHDGGDDHAAGAAAAEAPLVFKLAMSQRLLDLAIQLLPDNNTSATSAAARSAFGIVLRE 240

Query: 241 SFKVYDAFKXXXXXXXXXXXXXXXXXXXXXXXXXXHEILKKARAQTPELKEFYHXXXXXX 300
           SFKVYDAFK                          HEILKKARAQTPELKEFYH      
Sbjct: 241 SFKVYDAFKDGLDALLRSLAAAGGGGKASRASSSAHEILKKARAQTPELKEFYHKCKKSS 300

Query: 301 XXXXXXLDYPVVRVVTSAMELVMPPPVXXXXXXXXXXXXXXXXXXXXXXXXXSHPQPFAT 360
                 LDYPVVRVVTSAMELVMPPPV                         SHPQPFAT
Sbjct: 301 NVSSKSLDYPVVRVVTSAMELVMPPPVTDDEDDDGGGAATTEEAAGVAAQEASHPQPFAT 360

Query: 361 KLETTISTVWVEFXXXXXXXXXXXHSLQGVQSSYL 395
           KLETTISTVWVEF           HSLQGVQSSYL
Sbjct: 361 KLETTISTVWVEFDDGDGDGGGGDHSLQGVQSSYL 395



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,830,909
Number of extensions: 203720
Number of successful extensions: 1183
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)