BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0244300 Os11g0244300|AK062707
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0244300 Hypothetical protein 441 e-124
Os12g0209300 AAA ATPase, central region domain containing p... 171 5e-43
>Os11g0244300 Hypothetical protein
Length = 227
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/227 (94%), Positives = 215/227 (94%)
Query: 1 RCNVEVRIGLMPELLAGGLKXXXXXXXXXXXXALSCSTNSDRLKGIRNPSRNLNYSEEIE 60
RCNVEVRIGLMPELLAGGLK ALSCSTNSDRLKGIRNPSRNLNYSEEIE
Sbjct: 1 RCNVEVRIGLMPELLAGGLKREEDLDERDEFDALSCSTNSDRLKGIRNPSRNLNYSEEIE 60
Query: 61 KKLEKFSCASAASGGLQSCTTEGNTGMHRTRGKEVSVEQAKAVTVEEQRLESAWLQAVEK 120
KKLEKFSCASAASGGLQSCTTEGNTGMHRTRGKEVSVEQAKAVTVEEQRLESAWLQAVEK
Sbjct: 61 KKLEKFSCASAASGGLQSCTTEGNTGMHRTRGKEVSVEQAKAVTVEEQRLESAWLQAVEK 120
Query: 121 HAPGILNQMRPERNQVVPRISGEQYHRMPETDTVFPSRQVDKELSNGLKSLNIGSHGLRQ 180
HAPGILNQMRPERNQVVPRISGEQYHRMPETDTVFPSRQVDKELSNGLKSLNIGSHGLRQ
Sbjct: 121 HAPGILNQMRPERNQVVPRISGEQYHRMPETDTVFPSRQVDKELSNGLKSLNIGSHGLRQ 180
Query: 181 NGQMENGYAISPSLLHSNNHLANCDNESVVSEPGAPGCHGLFPCWKT 227
NGQMENGYAISPSLLHSNNHLANCDNESVVSEPGAPGCHGLFPCWKT
Sbjct: 181 NGQMENGYAISPSLLHSNNHLANCDNESVVSEPGAPGCHGLFPCWKT 227
>Os12g0209300 AAA ATPase, central region domain containing protein
Length = 1174
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 138/217 (63%), Gaps = 14/217 (6%)
Query: 1 RCNVEVRIGLMPELLAGGLKXXXX-XXXXXXXXALSCSTNSDRLKGIRNPS-RNLNYSEE 58
RC VEVR+GL+P+ +A GL LSCS+NSDRLKG N S RN +YS+E
Sbjct: 931 RCTVEVRMGLLPDFIASGLTSEMGPNVRRAESDVLSCSSNSDRLKGTLNTSSRNFDYSDE 990
Query: 59 IEKKLEKFSCASAASGGLQSCT-TEGNTGMHRTRGKEVSVEQAKAVTVEEQRLESAWLQA 117
++K LE+F ASA LQS + T N+G K + +K ++EQRLESAWLQA
Sbjct: 991 VKKGLEQFKFASAGDERLQSASVTSVNSG------KTKATHMSKISMIDEQRLESAWLQA 1044
Query: 118 VEKHAPGILNQMRPERNQVVPRISGEQYHRMPETDTVFPSRQVDKELSNGLKSLNI-GSH 176
EKH PG++NQ RP+R+QVVP+I Y R V PS Q D++LS+G+K++ I S+
Sbjct: 1045 AEKHTPGMVNQTRPDRHQVVPQIVSP-YERRSSMALVVPSGQEDEDLSHGIKAMKIVDSY 1103
Query: 177 GLR--QNGQMENGYAISPSLLHSNN-HLANCDNESVV 210
G++ QNG+ N +SPS LHS++ ++ NCD ES+V
Sbjct: 1104 GVQKDQNGRNVNRNVVSPSKLHSDDYYMENCDKESIV 1140
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,777,646
Number of extensions: 297461
Number of successful extensions: 589
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)