BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0242400 Os11g0242400|AK067025
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0242400  Rieske [2Fe-2S] region domain containing protein    403   e-113

>Os11g0242400 Rieske [2Fe-2S] region domain containing protein
          Length = 277

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/234 (86%), Positives = 202/234 (86%)

Query: 44  VVGCRXXXXXXXXXXXXXXXXXXDGNWVPVVPLAALPRGERRVIVQDGEEILLLWYKEQV 103
           VVGCR                  DGNWVPVVPLAALPRGERRVIVQDGEEILLLWYKEQV
Sbjct: 44  VVGCRAAEVSGAEPSAAAGEASGDGNWVPVVPLAALPRGERRVIVQDGEEILLLWYKEQV 103

Query: 104 YAVENRSPAEGAYTEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRALTPA 163
           YAVENRSPAEGAYTEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRALTPA
Sbjct: 104 YAVENRSPAEGAYTEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRALTPA 163

Query: 164 LRKLFVYPVKIDGENIYISIKGAVTSGGSAEIIFSGKAQPGFTASDVNIEEVRMVIDEDV 223
           LRKLFVYPVKIDGENIYISIKGAVTSGGSAEIIFSGKAQPGFTASDVNIEEVRMVIDEDV
Sbjct: 164 LRKLFVYPVKIDGENIYISIKGAVTSGGSAEIIFSGKAQPGFTASDVNIEEVRMVIDEDV 223

Query: 224 GGFGFTNKNELINGKAAIIGFLLLIDFEXXXXXXXXXXXXXXDFIYAISRAFSS 277
           GGFGFTNKNELINGKAAIIGFLLLIDFE              DFIYAISRAFSS
Sbjct: 224 GGFGFTNKNELINGKAAIIGFLLLIDFELLTGKGLLKGTGLLDFIYAISRAFSS 277



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,037,626
Number of extensions: 287914
Number of successful extensions: 541
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)