BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0241000 Os11g0241000|Os11g0241000
         (349 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0241000  Conserved hypothetical protein                      256   3e-68

>Os11g0241000 Conserved hypothetical protein
          Length = 349

 Score =  256 bits (653), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 159/315 (50%)

Query: 35  YDRWLAAELDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 94
           YDRWLAAELDE                                                 
Sbjct: 35  YDRWLAAELDELRAGAGAPLAAPCCAGAAWLARALALASAAQRRLVSSASAGAGAGAGVG 94

Query: 95  IDRKSVDECVEDAAELLDACAGLRDRLEMIRGYVSSMRVALHWLGDGXXXXXXXXXXXXX 154
           IDRKSVDECVEDAAELLDACAGLRDRLEMIRGYVSSMRVALHWLGDG             
Sbjct: 95  IDRKSVDECVEDAAELLDACAGLRDRLEMIRGYVSSMRVALHWLGDGAAAVTARRRAAAA 154

Query: 155 XXXXXXXXXXXGAELAKCGSNLRKLGERALTHAKXXXXXXRHGDXXXXXXXXXXXXXXXX 214
                      GAELAKCGSNLRKLGERALTHAK      RHGD                
Sbjct: 155 FAECEAVERRCGAELAKCGSNLRKLGERALTHAKQQQQQQRHGDAQADEALAGARAAALL 214

Query: 215 XXXXXXXXXXFXXXXXXXXXXXXXXXXXWECALQEVQRQVKEEYERRRKEGVPCMAELDX 274
                     F                 WECALQEVQRQVKEEYERRRKEGVPCMAELD 
Sbjct: 215 AIGALGAALAFRPRRAVSVGVAPPAGAPWECALQEVQRQVKEEYERRRKEGVPCMAELDA 274

Query: 275 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELEEKVFVLDEKVGELHRELIGVRMVL 334
                                            ELEEKVFVLDEKVGELHRELIGVRMVL
Sbjct: 275 AAAAGRAVQRAVAAGRPCPDAAAVVAAARRRCDELEEKVFVLDEKVGELHRELIGVRMVL 334

Query: 335 LEWSQAARGHQLLKF 349
           LEWSQAARGHQLLKF
Sbjct: 335 LEWSQAARGHQLLKF 349



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,128,704
Number of extensions: 100175
Number of successful extensions: 324
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)