Os11g0241000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0241000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.98 | 0.716 | 5.76 | 0.1 | 2.55 | 1.02 | -0.658 | -2.51 | -0.753 | 11.7 | 37.57 | 1293 | -- | -- |
| 241.25 | 0.723 | 5.74 | 0.369 | 2.56 | 0.944 | -0.478 | -- | -0.667 | 11.7 | 38.49 | 1297 | -- | -- |
| 232.56 | 0.71 | 5.73 | 0.156 | 2.5 | 1.1 | -- | -2.76 | -0.647 | 11.6 | 45.73 | 1291 | -- | -- |
| 241.23 | 0.723 | 5.73 | 0.38 | 2.54 | 1.04 | -- | -- | -0.63 | 11.7 | 44.6 | 1291 | -- | -- |
| 363.45 | 0.893 | 5.76 | 0.38 | -- | 2.88 | -- | -1.04 | -0.505 | -- | -3.541e-05 | 49 | -- | -- |
| 267.86 | 0.767 | 5.71 | 0.448 | 2.41 | -- | -0.532 | -- | -0.508 | 11.7 | -- | -- | -- | -- |
| 269.08 | 0.768 | 5.71 | 0.427 | 2.41 | -- | -- | -- | -0.511 | 11.6 | -- | -- | -- | -- |
| 345.72 | 0.866 | 5.78 | 0.425 | -- | 3.01 | -- | -- | -0.594 | -- | -0.9922 | 46 | -- | -- |
| 245.23 | 0.729 | 5.74 | -- | 2.54 | 1.02 | -- | -- | -0.677 | 11.7 | 42.3 | 1291 | -- | -- |
| 633.69 | 1.18 | 5.76 | 0.359 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 273.87 | 0.774 | 5.72 | -- | 2.4 | -- | -- | -- | -0.559 | 11.6 | -- | -- | -- | -- |
| 350.31 | 0.872 | 5.79 | -- | -- | 3.01 | -- | -- | -0.647 | -- | -1.638 | 46 | -- | -- |
| 637.08 | 1.18 | 5.77 | -- | -- | -- | -- | -- | -0.579 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 2 | 229.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 4 | 229.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 11 | 229.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 41 | 230.15 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 44 | 230.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 45 | 230.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 60 | 230.78 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 61 | 230.79 | radiation | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 63 | 230.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 115 | 231.68 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 119 | 231.83 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 139 | 232.12 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 177 | 232.43 | radiation | 40 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 184 | 232.51 | radiation | 40 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 219 | 232.80 | radiation | 40 | 1440 | > th | dose dependent | sin | 8 | NA |
| 237 | 233.06 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 9 |
| 240 | 233.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 281 | 233.30 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 294 | 233.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 296 | 233.37 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 328 | 233.62 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 414 | 233.91 | radiation | 20 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 423 | 234.02 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 475 | 234.30 | radiation | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 477 | 234.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 516 | 234.43 | radiation | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 519 | 234.48 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 679 | 234.58 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 688 | 234.67 | radiation | 1 | 1440 | > th | dose dependent | sin | 20 | NA |
| 689 | 234.67 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 769 | 234.90 | radiation | 40 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 780 | 234.96 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 873 | 235.26 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 920 | 235.32 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 934 | 235.37 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 936 | 235.39 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 939 | 235.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 953 | 235.44 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 12 |