BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0221000 Os11g0221000|AK102073
         (288 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0221000  Aux/IAA_ARF_dimerisation domain containing pro...   316   1e-86

>Os11g0221000 Aux/IAA_ARF_dimerisation domain containing protein
          Length = 288

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/288 (58%), Positives = 169/288 (58%)

Query: 1   MMNLISFETPPLGRRSQDGGXXXXXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXXX 60
           MMNLISFETPPLGRRSQDGG                     H                  
Sbjct: 1   MMNLISFETPPLGRRSQDGGSSSSSITAATTTTNKAKEAASHLDLSLGISLSPGGGGGDA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXMLTAXXXXXXXXXXXXDNXXXXXXXXXXXXXXFMPSPT 120
                                 MLTA            DN              FMPSPT
Sbjct: 61  GTKASSCCYGGGGDGGGCMGSGMLTAGVLGVGHGGSSHDNTTASSGGGGSWTAAFMPSPT 120

Query: 121 GFMHPWSLXXXXXXXXXXXXXSGVARLPPATTTYMPRAAATVISLPAAVGWPPVHTSRRN 180
           GFMHPWSL             SGVARLPPATTTYMPRAAATVISLPAAVGWPPVHTSRRN
Sbjct: 121 GFMHPWSLAARQQKAAAEQERSGVARLPPATTTYMPRAAATVISLPAAVGWPPVHTSRRN 180

Query: 181 LVATINNVLKPDTTAAVKPDRPTQATAMFAADXXXXXXXXXXXXXXXXXXXLNMFAKVHM 240
           LVATINNVLKPDTTAAVKPDRPTQATAMFAAD                   LNMFAKVHM
Sbjct: 181 LVATINNVLKPDTTAAVKPDRPTQATAMFAADETTAPPPRSAAAATEASRTLNMFAKVHM 240

Query: 241 DGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCREYPIFLFYFFLITG 288
           DGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCREYPIFLFYFFLITG
Sbjct: 241 DGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCREYPIFLFYFFLITG 288



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,768,029
Number of extensions: 163459
Number of successful extensions: 665
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)