FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0221000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aux/IAA_ARF_dimerisation domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0373) R2 : 0.111
β1 : -0.69 (0.137) R2dD : 0.0514 R2D : 0.0568
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.365 (0.0798) R2dN8 : 0.0545 R2N8 : 0.06
σ : 0.701
deviance : 225.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.97 0.681 3.33 -2.04 0.282 0.932 -0.227 -5.54 0.0923 4.52 25.58 3641 -- --
215.36 0.683 3.22 -1.02 0.327 0.545 -0.243 -- 0.157 4.27 17.99 9250 -- --
210.1 0.675 3.33 -2.03 0.282 0.915 -- -5.42 0.0874 4.48 25.43 3640 -- --
215.29 0.683 3.22 -0.979 0.28 0.476 -- -- 0.187 3.9 18.09 9238 -- --
214.04 0.681 3.33 -1.99 -- 0.885 -- -5 0.0973 -- 25.03 3985 -- --
220.33 0.696 3.18 -0.706 0.291 -- -0.233 -- 0.355 3.59 -- -- -- --
220.49 0.695 3.18 -0.702 0.29 -- -- -- 0.357 3.62 -- -- -- --
219.26 0.69 3.22 -0.963 -- 0.478 -- -- 0.191 -- 18.48 8440 -- --
232.45 0.714 3.16 -- 0.208 -0.283 -- -- 0.43 3.86 27.7 6848 -- --
225.17 0.701 3.18 -0.69 -- -- -- -- 0.365 -- -- -- -- --
233.48 0.715 3.16 -- 0.276 -- -- -- 0.435 3.64 -- -- -- --
234.36 0.715 3.16 -- -- -0.454 -- -- 0.431 -- 27.7 6848 -- --
237.73 0.72 3.16 -- -- -- -- -- 0.441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.91 temperature 20 90 > th dose dependent rect. 15 18
3 206.57 radiation 1 720 > th dose dependent rect. 18 11
5 207.40 temperature 25 720 > th dose dependent rect. 15 18
6 207.44 temperature 20 90 > th dose dependent rect. 15 15
7 207.45 temperature 20 90 > th dose dependent rect. 15 13
14 207.67 temperature 25 43200 > th dose independent rect. 21 1
15 207.68 temperature 25 43200 < th dose independent rect. 21 1
19 207.85 temperature 20 90 > th dose dependent rect. 15 11
21 207.87 radiation 1 720 > th dose dependent rect. 18 1
32 207.89 temperature 25 1440 > th dose dependent rect. 21 1
59 207.99 temperature 30 43200 < th dose independent rect. 14 2
70 208.01 temperature 25 1440 > th dose dependent rect. 20 3
72 208.02 temperature 25 43200 > th dose dependent rect. 17 2
73 208.03 temperature 30 43200 > th dose independent rect. 14 2
82 208.04 temperature 25 43200 > th dose independent rect. 17 12
89 208.05 temperature 25 43200 < th dose independent rect. 17 13
93 208.07 humidity 90 43200 > th dose dependent rect. 13 12
141 208.17 temperature 25 43200 > th dose independent sin 12 NA
155 208.19 temperature 25 43200 < th dose independent sin 12 NA
203 208.24 temperature 25 43200 > th dose dependent rect. 15 14
219 208.26 temperature 20 90 > th dose dependent sin 13 NA
244 208.29 humidity 90 43200 > th dose dependent rect. 22 1
258 208.30 temperature 25 43200 > th dose dependent sin 14 NA
266 208.31 humidity 70 43200 > th dose dependent rect. 13 2
325 208.37 temperature 25 1440 > th dose dependent rect. 18 7
343 208.39 humidity 90 43200 > th dose dependent sin 17 NA
431 208.45 temperature 25 43200 < th dose independent rect. 4 6
443 208.46 humidity 90 43200 > th dose independent rect. 1 21
490 208.49 temperature 25 43200 > th dose independent rect. 4 6
536 208.51 temperature 25 43200 > th dose dependent rect. 5 17
561 208.52 temperature 25 43200 > th dose dependent no NA NA
562 208.52 temperature 25 43200 > th dose dependent rect. 7 15
592 208.53 humidity 90 43200 > th dose independent rect. 13 11
626 208.53 temperature 25 43200 > th dose dependent rect. 21 23
632 208.54 humidity 90 43200 > th dose independent rect. 1 18
633 208.54 humidity 90 43200 > th dose independent rect. 12 22
685 208.55 temperature 25 1440 > th dose dependent rect. 18 13
699 208.55 humidity 90 43200 > th dose dependent rect. 6 21
714 208.56 humidity 90 43200 > th dose independent rect. 21 22
723 208.57 temperature 25 43200 < th dose independent rect. 7 1
743 208.58 humidity 90 43200 > th dose independent rect. 12 13
765 208.59 humidity 90 43200 > th dose independent rect. 6 23
766 208.59 humidity 90 43200 > th dose independent rect. 9 23
773 208.60 humidity 90 43200 > th dose independent no NA NA
774 208.60 temperature 25 43200 > th dose independent rect. 7 1
790 208.60 humidity 80 43200 > th dose dependent rect. 2 17
792 208.60 humidity 90 43200 > th dose dependent rect. 12 22
802 208.61 humidity 90 43200 > th dose independent rect. 4 23
807 208.61 humidity 90 43200 > th dose dependent rect. 12 20
812 208.62 humidity 90 43200 > th dose independent sin 17 NA
837 208.63 temperature 25 720 > th dose dependent sin 13 NA
845 208.63 humidity 90 43200 > th dose dependent rect. 2 23
906 208.66 humidity 90 43200 > th dose independent rect. 15 23
920 208.66 humidity 90 43200 > th dose dependent rect. 21 22
996 208.70 humidity 90 43200 > th dose dependent no NA NA
998 208.70 humidity 90 43200 > th dose dependent rect. 20 4