BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0220700 Os11g0220700|AK069168
         (199 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0220700  Hypothetical protein                                269   1e-72
Os02g0463600                                                       67   1e-11
Os05g0227800  Homeodomain-like containing protein                  65   5e-11
Os07g0554400                                                       64   6e-11

>Os11g0220700 Hypothetical protein
          Length = 199

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 143/199 (71%)

Query: 1   MGDAGGPLPGERRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPTA 60
           MGDAGGPLPGERRL                                          TPTA
Sbjct: 1   MGDAGGPLPGERRLSPADPEEPSPPASSSDGTGSGGGGGENSVEEGDGEGPGSGSGTPTA 60

Query: 61  KRQLFDADGSASRPTRRRRIASDDEITQAFTGXXXXXXXXXXXXXXPFIAVLDSMWSKKR 120
           KRQLFDADGSASRPTRRRRIASDDEITQAFTG              PFIAVLDSMWSKKR
Sbjct: 61  KRQLFDADGSASRPTRRRRIASDDEITQAFTGETTSENTSSTNESNPFIAVLDSMWSKKR 120

Query: 121 ELDAIKEAGKDERHEKLLSLQKERLALERQKLEYERNLLEFKRNQRDERIMNMDLSDMTG 180
           ELDAIKEAGKDERHEKLLSLQKERLALERQKLEYERNLLEFKRNQRDERIMNMDLSDMTG
Sbjct: 121 ELDAIKEAGKDERHEKLLSLQKERLALERQKLEYERNLLEFKRNQRDERIMNMDLSDMTG 180

Query: 181 QLREYYLRLQGEIMARRSG 199
           QLREYYLRLQGEIMARRSG
Sbjct: 181 QLREYYLRLQGEIMARRSG 199



>Os02g0463600 
          Length = 378

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)

Query: 111 VLDSMWSKKRELDAIKEAGKDERHEKLLSLQKERLALERQKLEYERNLLEFKRNQRDERI 170
             D +W KK+E DA KE  +DERH+K   L K+RL L+++K+  E + ++ KR   +ERI
Sbjct: 265 AFDHLWEKKKEADAEKE--RDERHQKSYELDKQRLELDKKKVANEMDEIQLKRILEEERI 322

Query: 171 MNMDLSDMTGQLREYYLRLQGEIMARR 197
           M MD+S      +++Y  +Q EI++RR
Sbjct: 323 MTMDISSKPLSQQQFYKCVQDEIISRR 349



>Os05g0227800 Homeodomain-like containing protein
          Length = 377

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 14/104 (13%)

Query: 108 FIAVLDSMWSKKRELDAIKEAGKDERHEKLLSLQKERLALERQKLEYE-RNL-------- 158
           F+  LD + +KK+E D  KE  KDER+ +  +L++E++ALE+ K+  E +NL        
Sbjct: 269 FVEDLDDLLAKKKEADVEKELKKDERYIQSHALEQEKVALEQAKVANETKNLEMRSKELE 328

Query: 159 -----LEFKRNQRDERIMNMDLSDMTGQLREYYLRLQGEIMARR 197
                ++ KR   +ERIM MD+S M+G  ++YY  LQ EI+ RR
Sbjct: 329 LKTKEIDLKRMLEEERIMTMDISAMSGLQQQYYKSLQEEIVTRR 372



>Os07g0554400 
          Length = 346

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 60/91 (65%), Gaps = 7/91 (7%)

Query: 109 IAVLDSMWSKKRELDAIKEAGKDERHEKLLSLQKERLALERQKLEYERNLLEFKRNQRDE 168
           I  LD +W+KK+E DA KE  ++ER+   L+L+++R+ LE++K       L+FKR   ++
Sbjct: 261 IDALDHLWAKKKEADAEKERQREERYRAALALEQQRINLEKEK-------LDFKRMIEED 313

Query: 169 RIMNMDLSDMTGQLREYYLRLQGEIMARRSG 199
           R++ +D S M+ + +EYY  ++  I++RRS 
Sbjct: 314 RLLRLDTSAMSIEEQEYYKSVKTSILSRRSA 344



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,879,715
Number of extensions: 134849
Number of successful extensions: 784
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 7
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)