BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0216100 Os11g0216100|AK059179
         (251 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0216100  Similar to Chaperone protein dnaJ                   395   e-110

>Os11g0216100 Similar to Chaperone protein dnaJ
          Length = 251

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/251 (78%), Positives = 198/251 (78%)

Query: 1   MAASTASAPFTPLLHRRRASVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAASTASAPFTPLLHRRRASVH                                      
Sbjct: 1   MAASTASAPFTPLLHRRRASVHGRRGSGRAFVAVVVAAAAGGAPETEPSPATAAGAAAQG 60

Query: 61  XXXXVDTRIHWSDPDEGWVGGNAKKDGGGRKKEPLGGRFADLINNPSESHYQFLGVEPKA 120
               VDTRIHWSDPDEGWVGGNAKKDGGGRKKEPLGGRFADLINNPSESHYQFLGVEPKA
Sbjct: 61  KKKTVDTRIHWSDPDEGWVGGNAKKDGGGRKKEPLGGRFADLINNPSESHYQFLGVEPKA 120

Query: 121 DIEEIKAAYRRLSKEYHPDTTSLPLREASERFIRLREAYNVLSREESRRFYDWTLAQEAE 180
           DIEEIKAAYRRLSKEYHPDTTSLPLREASERFIRLREAYNVLSREESRRFYDWTLAQEAE
Sbjct: 121 DIEEIKAAYRRLSKEYHPDTTSLPLREASERFIRLREAYNVLSREESRRFYDWTLAQEAE 180

Query: 181 XXXXXXXXXXXEDPYQQDLDSYQSVPDMVDRLGGRNMDLSDQAMTALTIDIGIIIFCVFC 240
                      EDPYQQDLDSYQSVPDMVDRLGGRNMDLSDQAMTALTIDIGIIIFCVFC
Sbjct: 181 SRRLQQLRSRLEDPYQQDLDSYQSVPDMVDRLGGRNMDLSDQAMTALTIDIGIIIFCVFC 240

Query: 241 LIYAVFFKEQY 251
           LIYAVFFKEQY
Sbjct: 241 LIYAVFFKEQY 251



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,123,666
Number of extensions: 275065
Number of successful extensions: 1167
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)