BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0194600 Os11g0194600|AK072582
         (186 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0194600  Conserved hypothetical protein                      318   1e-87
Os11g0194100  Conserved hypothetical protein                      318   1e-87
Os11g0191500  Conserved hypothetical protein                      285   1e-77
AK072804                                                          152   1e-37

>Os11g0194600 Conserved hypothetical protein
          Length = 186

 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/169 (92%), Positives = 156/169 (92%)

Query: 18  SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77
           SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE
Sbjct: 18  SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77

Query: 78  AKAMATKLLATMKGKGVPPVCLQQCTASVDTXXXXXXXXXXXXXDVNKKYRDLDGFLVGF 137
           AKAMATKLLATMKGKGVPPVCLQQCTASVDT             DVNKKYRDLDGFLVGF
Sbjct: 78  AKAMATKLLATMKGKGVPPVCLQQCTASVDTLSNALAAFFSASADVNKKYRDLDGFLVGF 137

Query: 138 LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 186
           LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS
Sbjct: 138 LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 186



>Os11g0194100 Conserved hypothetical protein
          Length = 186

 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/169 (92%), Positives = 156/169 (92%)

Query: 18  SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77
           SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE
Sbjct: 18  SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77

Query: 78  AKAMATKLLATMKGKGVPPVCLQQCTASVDTXXXXXXXXXXXXXDVNKKYRDLDGFLVGF 137
           AKAMATKLLATMKGKGVPPVCLQQCTASVDT             DVNKKYRDLDGFLVGF
Sbjct: 78  AKAMATKLLATMKGKGVPPVCLQQCTASVDTLSNALAAFFSASADVNKKYRDLDGFLVGF 137

Query: 138 LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 186
           LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS
Sbjct: 138 LKQPPICMSACPIRSCDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 186



>Os11g0191500 Conserved hypothetical protein
          Length = 154

 Score =  285 bits (729), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/154 (90%), Positives = 140/154 (90%)

Query: 33  GPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGK 92
           GPCSRTGDKKACVELLSGIPEARKATTVGPLAELYL+AIAN TTEAKAMATKLLATMKGK
Sbjct: 1   GPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLRAIANQTTEAKAMATKLLATMKGK 60

Query: 93  GVPPVCLQQCTASVDTXXXXXXXXXXXXXDVNKKYRDLDGFLVGFLKQPPICMSACPIRS 152
           GVPPVCLQQCTASVDT             DVNKKYRDLDGFLVGFLKQPPICMSACPIRS
Sbjct: 61  GVPPVCLQQCTASVDTLSNALAAFFSASADVNKKYRDLDGFLVGFLKQPPICMSACPIRS 120

Query: 153 CDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 186
           CDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS
Sbjct: 121 CDMEEVTIADKFHQAWKMLGVAHDLITQILGTKS 154



>AK072804 
          Length = 120

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 18 SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77
          SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE
Sbjct: 18 SMAAQEAGDAPASITGPCSRTGDKKACVELLSGIPEARKATTVGPLAELYLQAIANHTTE 77

Query: 78 AKAMATKLLATMKGKG 93
          AKAMATKLLATMKGKG
Sbjct: 78 AKAMATKLLATMKGKG 93



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,237,035
Number of extensions: 161947
Number of successful extensions: 393
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 5
Length of query: 186
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 91
Effective length of database: 12,075,471
Effective search space: 1098867861
Effective search space used: 1098867861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)