BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0182100 Os11g0182100|AK107888
         (256 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0182100  Conserved hypothetical protein                      223   9e-59

>Os11g0182100 Conserved hypothetical protein
          Length = 256

 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 132/256 (51%)

Query: 1   SSFAFELKDXXXXXXXXXXXXAVISVEMAAAAMDDSFRRAGAIPFKWEICPGTPKHXXXX 60
           SSFAFELKD            AVISVEMAAAAMDDSFRRAGAIPFKWEICPGTPKH    
Sbjct: 1   SSFAFELKDQERNQEEIERIEAVISVEMAAAAMDDSFRRAGAIPFKWEICPGTPKHARSA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXTRQQLALPPCMTSPRASPSPYYHXXXXXXXXXXXXXXXX 120
                                TRQQLALPPCMTSPRASPSPYYH                
Sbjct: 61  SASAASAAVVSPVPPALAKVATRQQLALPPCMTSPRASPSPYYHSPRLSSAAACRSAASA 120

Query: 121 XXXXXXXXGGGSAYRPRPTAFLDLAPRATTAPDLYGXXXXXXXXXXXXXXXYGCFLLPLL 180
                   GGGSAYRPRPTAFLDLAPRATTAPDLYG               YGCFLLPLL
Sbjct: 121 SPCRSRYAGGGSAYRPRPTAFLDLAPRATTAPDLYGAAHEADHDEPAAAPAYGCFLLPLL 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEPXXXXXXXXXXXXXXXXXXXNRIRLAAG 240
                                        DGEP                   NRIRLAAG
Sbjct: 181 RRKGSSKKRGGGGYSSGSGGSSSSGSFRSDGEPGGGLRRSASSSFSFARGGGNRIRLAAG 240

Query: 241 ARQQEEVEAASGSWFF 256
           ARQQEEVEAASGSWFF
Sbjct: 241 ARQQEEVEAASGSWFF 256



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,134,713
Number of extensions: 123136
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)