BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0181900 Os11g0181900|AK063374
(547 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0181900 Prefoldin domain containing protein 979 0.0
>Os11g0181900 Prefoldin domain containing protein
Length = 547
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/547 (88%), Positives = 483/547 (88%)
Query: 1 MPALQPPPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MPALQPPPASS
Sbjct: 1 MPALQPPPASSPGRERERGDAAASSAGGRRRSRSPPWSPRARSPSLSRSPPSSSSSSSED 60
Query: 61 XXXNCETQTETAWMELGFSNSGPRGVTEITYLLRSHELKISELESKEQIYCNSLVQLEER 120
NCETQTETAWMELGFSNSGPRGVTEITYLLRSHELKISELESKEQIYCNSLVQLEER
Sbjct: 61 ERENCETQTETAWMELGFSNSGPRGVTEITYLLRSHELKISELESKEQIYCNSLVQLEER 120
Query: 121 IASLEYYKEKLLTRLSWTEEANSTLRSDNSKLKNLAYSLKERVDELEKDNFMLGLKMNEF 180
IASLEYYKEKLLTRLSWTEEANSTLRSDNSKLKNLAYSLKERVDELEKDNFMLGLKMNEF
Sbjct: 121 IASLEYYKEKLLTRLSWTEEANSTLRSDNSKLKNLAYSLKERVDELEKDNFMLGLKMNEF 180
Query: 181 AQEMERFQMQVGSTNTQMQDNLDDMAKAFESKERHVTFTQQKLADSINHHEERITTLEQD 240
AQEMERFQMQVGSTNTQMQDNLDDMAKAFESKERHVTFTQQKLADSINHHEERITTLEQD
Sbjct: 181 AQEMERFQMQVGSTNTQMQDNLDDMAKAFESKERHVTFTQQKLADSINHHEERITTLEQD 240
Query: 241 ISQCTQHVQSLQVKVKSNTSQLETNNNDHHSLENRIQVLESTERQNASRLVKMEESIIHQ 300
ISQCTQHVQSLQVKVKSNTSQLETNNNDHHSLENRIQVLESTERQNASRLVKMEESIIHQ
Sbjct: 241 ISQCTQHVQSLQVKVKSNTSQLETNNNDHHSLENRIQVLESTERQNASRLVKMEESIIHQ 300
Query: 301 HERTIGVEQDLSANITQHGQQIQTLQNKVQLQTNNNEAHLLENRIQVLESAERQNASRLV 360
HERTIGVEQDLSANITQHGQQIQTLQNKVQLQTNNNEAHLLENRIQVLESAERQNASRLV
Sbjct: 301 HERTIGVEQDLSANITQHGQQIQTLQNKVQLQTNNNEAHLLENRIQVLESAERQNASRLV 360
Query: 361 KMEDSIIHQHERIIGVEQDMSANITQHGQQVQTLQNKENDVLMKSFQSLLTCMVPFIVAF 420
KMEDSIIHQHERIIGVEQDMSANITQHGQQVQTLQNKENDVLMKSFQSLLTCMVPFIVAF
Sbjct: 361 KMEDSIIHQHERIIGVEQDMSANITQHGQQVQTLQNKENDVLMKSFQSLLTCMVPFIVAF 420
Query: 421 LLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMVFAHLASGPFWTSIVASLTLYFVIYS 480
LLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMVFAHLASGPFWTSIVASLTLYFVIYS
Sbjct: 421 LLSMLSSQSDFGEYEKDLVIQVSLVCGLPGVMAMVFAHLASGPFWTSIVASLTLYFVIYS 480
Query: 481 ITLVYYAFIRLLPWSPWTRLQFYATXXXXXXXXXXXXTMLIVWGSFVKKPKFTRWIASYF 540
ITLVYYAFIRLLPWSPWTRLQFYAT TMLIVWGSFVKKPKFTRWIASYF
Sbjct: 481 ITLVYYAFIRLLPWSPWTRLQFYATVILLAIFLIVVLTMLIVWGSFVKKPKFTRWIASYF 540
Query: 541 SCCPGPE 547
SCCPGPE
Sbjct: 541 SCCPGPE 547
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,546,105
Number of extensions: 439374
Number of successful extensions: 2176
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2168
Number of HSP's successfully gapped: 2
Length of query: 547
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 441
Effective length of database: 11,501,117
Effective search space: 5071992597
Effective search space used: 5071992597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)