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Os11g0181900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.03 (0.0214) R2 : 0.78
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.98 (0.0537) R2dC : 0.671 R2C : 0.556
β3 : 1.34 (0.0646) R2dE : 0.214 R2E : 0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.22 (0.0451) R2dN8 : 0.0147 R2N8 : 0.000907
σ : 0.402
deviance : 74.44
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_____
C
peak time of C : 21.1
E
wheather : radiation
threshold : 2.226
memory length : 110
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 21.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.11 0.396 8.02 0.353 1.94 1.32 0.152 -0.323 0.267 21.2 2.048 96 21.2 --
71.09 0.393 8.03 0.347 1.97 1.34 0.148 -- 0.263 21.1 2.241 104 21.5 --
71.03 0.393 8.02 0.349 1.95 1.3 -- -0.329 0.269 21.2 2.201 101 21.3 --
71.1 0.393 8.03 0.351 1.97 1.34 -- -- 0.255 21.1 2.127 110 21.5 --
131.84 0.538 7.98 0.353 -- 1.61 -- 0.146 0.221 -- 8.746 9 6.92 --
103.41 0.477 8.03 0.354 1.92 -- 0.148 -- 0.192 22.8 -- -- -- --
103.5 0.476 8.03 0.348 1.92 -- -- -- 0.191 22.8 -- -- -- --
103.72 0.474 7.99 0.335 -- 1.91 -- -- 0.184 -- 394.6 2 7.24 --
74.44 0.402 8.03 -- 1.98 1.34 -- -- 0.22 21.1 2.226 110 21.6 --
331.8 0.851 7.98 0.387 -- -- -- -- 0.203 -- -- -- -- --
106.69 0.483 8.04 -- 1.92 -- -- -- 0.153 22.8 -- -- -- --
106.82 0.483 7.99 -- -- 1.91 -- -- 0.154 -- 670.1 2 7.22 --
335.76 0.855 7.99 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.16 temperature 10.0 90 > th dose dependent rect. 15 14
3 68.35 temperature 10.0 270 > th dose dependent rect. 13 15
5 68.53 radiation 1.0 90 > th dose independent rect. 4 11
25 71.26 humidity 50.0 270 > th dose independent rect. 4 20
34 71.99 radiation 10.0 270 < th dose dependent rect. 16 8
36 72.14 temperature 30.0 270 < th dose independent rect. 17 7
38 72.22 radiation 1.0 90 < th dose independent sin 3 NA
44 72.45 radiation 1.0 90 > th dose independent sin 3 NA
50 72.64 radiation 1.0 270 < th dose independent rect. 16 8
52 72.65 radiation 1.0 90 < th dose dependent sin 3 NA
55 72.85 humidity 60.0 270 > th dose independent rect. 17 7
62 73.10 radiation 1.0 90 < th dose independent rect. 1 7
75 73.50 radiation 10.0 90 < th dose dependent rect. 1 7
85 73.70 radiation 1.0 90 < th dose independent rect. 1 14
87 73.72 radiation 1.0 270 < th dose dependent rect. 24 9
93 73.79 humidity 50.0 270 > th dose independent rect. 4 9
113 74.07 temperature 30.0 270 < th dose independent rect. 5 19
115 74.09 temperature 10.0 270 > th dose dependent rect. 24 4
132 74.31 temperature 30.0 270 < th dose dependent rect. 17 6
160 74.67 wind 9.0 270 < th dose independent rect. 13 15
163 74.72 humidity 80.0 270 > th dose independent rect. 24 5
183 74.87 precipitation 0.1 270 < th dose independent rect. 4 9
184 74.87 precipitation 0.1 270 < th dose dependent rect. 4 9
187 74.90 atmosphere 995.0 270 > th dose independent rect. 17 7
189 74.91 wind 9.0 270 < th dose independent rect. 24 17
194 74.96 humidity 80.0 270 > th dose independent rect. 1 2
198 74.99 temperature 30.0 10 < th dose dependent rect. 18 8
225 75.11 atmosphere 1015.0 270 < th dose independent rect. 24 17
228 75.13 temperature 10.0 270 > th dose independent rect. 17 7
232 75.13 temperature 10.0 270 > th dose independent rect. 24 17
236 75.14 precipitation 0.1 270 < th dose independent rect. 13 15
237 75.14 precipitation 0.1 270 < th dose dependent rect. 13 15
251 75.27 temperature 10.0 270 > th dose dependent rect. 1 2
259 75.34 temperature 20.0 90 > th dose independent rect. 15 14
260 75.35 temperature 10.0 270 > th dose independent rect. 4 9
261 75.35 atmosphere 995.0 270 > th dose independent rect. 4 9
262 75.35 atmosphere 1015.0 270 < th dose independent rect. 4 9
263 75.35 temperature 10.0 270 > th dose independent rect. 13 15
273 75.45 wind 9.0 270 < th dose independent rect. 4 9
280 75.47 wind 9.0 270 < th dose independent rect. 17 7
283 75.48 humidity 50.0 90 > th dose independent rect. 6 9
303 75.64 temperature 20.0 10 > th dose independent rect. 15 15
312 75.72 temperature 20.0 270 > th dose independent rect. 24 4
325 75.81 precipitation 0.1 270 < th dose independent rect. 24 17
327 75.81 precipitation 0.1 270 < th dose dependent rect. 24 17
332 75.84 humidity 50.0 270 > th dose dependent rect. 24 5
337 75.88 atmosphere 1015.0 270 < th dose independent rect. 24 5
341 75.89 temperature 10.0 270 > th dose independent rect. 24 5
342 75.89 temperature 30.0 270 < th dose independent rect. 24 5
343 75.89 humidity 50.0 270 > th dose independent rect. 24 5
346 75.89 atmosphere 995.0 270 > th dose independent rect. 24 5
351 75.89 temperature 10.0 270 > th dose independent rect. 5 19
352 75.90 wind 9.0 270 < th dose independent rect. 24 5
359 75.96 humidity 80.0 30 > th dose dependent rect. 24 8
398 76.19 radiation 40.0 10 < th dose dependent rect. 14 16
421 76.32 temperature 20.0 270 > th dose independent rect. 1 2
431 76.38 atmosphere 995.0 270 > th dose independent rect. 5 19
450 76.44 humidity 50.0 270 > th dose dependent rect. 1 2
459 76.51 atmosphere 995.0 90 > th dose independent rect. 6 9
462 76.52 temperature 10.0 90 > th dose independent rect. 6 9
463 76.52 atmosphere 1015.0 90 < th dose independent rect. 6 9
470 76.54 precipitation 0.1 270 < th dose independent rect. 17 7
472 76.54 precipitation 0.1 270 < th dose dependent rect. 17 7
478 76.56 wind 9.0 30 < th dose independent rect. 6 9
502 76.59 radiation 40.0 90 < th dose independent rect. 15 15
515 76.62 precipitation 0.1 10 < th dose independent rect. 6 9
516 76.62 precipitation 0.1 10 < th dose dependent rect. 6 9
518 76.64 precipitation 0.1 270 < th dose independent rect. 24 5
521 76.64 precipitation 0.1 270 < th dose dependent rect. 24 5
530 76.67 atmosphere 1015.0 30 < th dose independent rect. 15 15
545 76.71 temperature 20.0 30 > th dose independent rect. 6 9
555 76.76 temperature 10.0 10 > th dose independent rect. 6 9
557 76.76 atmosphere 995.0 10 > th dose independent rect. 6 9
558 76.76 atmosphere 1015.0 10 < th dose independent rect. 6 9
559 76.76 temperature 10.0 10 > th dose independent rect. 15 15
569 76.77 wind 9.0 270 < th dose independent rect. 5 19
579 76.84 temperature 10.0 1440 > th dose independent rect. 7 9
582 76.84 temperature 10.0 1440 > th dose independent rect. 16 15
604 76.93 temperature 10.0 270 > th dose independent rect. 1 2
606 76.93 temperature 30.0 270 < th dose independent rect. 1 2
607 76.93 humidity 50.0 270 > th dose independent rect. 1 2
610 76.93 atmosphere 995.0 270 > th dose independent rect. 1 2
611 76.93 atmosphere 1010.0 270 < th dose independent rect. 1 2
613 76.93 radiation 1.0 270 < th dose independent rect. 1 2
619 76.93 temperature 10.0 270 > th dose independent rect. 3 22
620 76.93 radiation 1.0 270 < th dose dependent rect. 1 2
628 76.94 wind 9.0 270 < th dose independent rect. 1 2
635 76.97 atmosphere 995.0 270 > th dose independent rect. 24 17
637 76.98 precipitation 0.1 270 < th dose independent rect. 1 2
639 76.98 precipitation 0.1 270 < th dose dependent rect. 1 2
643 77.01 wind 9.0 270 < th dose dependent rect. 24 4
647 77.02 radiation 1.0 270 < th dose dependent sin 6 NA
656 77.04 radiation 20.0 10 < th dose dependent rect. 2 4
658 77.05 wind 1.0 270 > th dose independent rect. 17 7
782 77.36 humidity 80.0 10 > th dose independent rect. 1 5
813 77.48 humidity 50.0 270 > th dose dependent rect. 17 7
817 77.49 atmosphere 1015.0 270 < th dose dependent rect. 24 5
842 77.61 precipitation 0.1 270 < th dose independent rect. 5 19
843 77.61 precipitation 0.1 270 < th dose dependent rect. 5 19
865 77.69 wind 9.0 270 < th dose dependent rect. 1 2
893 77.79 atmosphere 1015.0 270 < th dose independent rect. 13 15
912 77.84 wind 1.0 10 > th dose independent rect. 6 9
920 77.87 temperature 20.0 10 > th dose independent rect. 1 5
995 78.08 temperature 10.0 270 > th dose dependent rect. 23 20