BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0175300 Os11g0175300|AK072817
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0175300 Conserved hypothetical protein 341 5e-94
Os11g0175200 127 1e-29
Os11g0174700 87 2e-17
Os11g0174432 83 4e-16
Os11g0174366 75 7e-14
>Os11g0175300 Conserved hypothetical protein
Length = 360
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 195/360 (54%)
Query: 1 METLRPVATATATLPSGVXXXXXXXXXRGYPGWVMLMPYATAEREVDDSEYSTSNSGGAK 60
METLRPVATATATLPSGV RGYPGWVMLMPYATAEREVDDSEYSTSNSGGAK
Sbjct: 1 METLRPVATATATLPSGVPPPAAAAAARGYPGWVMLMPYATAEREVDDSEYSTSNSGGAK 60
Query: 61 ITGAASRSSSGHLVRVSLRLESPPAASGLSFHCSPCGGSGYGAHHYRPSMYVVAAHGDSV 120
ITGAASRSSSGHLVRVSLRLESPPAASGLSFHCSPCGGSGYGAHHYRPSMYVVAAHGDSV
Sbjct: 61 ITGAASRSSSGHLVRVSLRLESPPAASGLSFHCSPCGGSGYGAHHYRPSMYVVAAHGDSV 120
Query: 121 LLEMHYQKEGYQQYGIDYFFYNAGDGDEDXXXXXXXXXXXXXIRVPIPSRPGCVEVXXXX 180
LLEMHYQKEGYQQYGIDYFFYNAGDGDED IRVPIPSRPGCVEV
Sbjct: 121 LLEMHYQKEGYQQYGIDYFFYNAGDGDEDPPRRPPSLSLSRLIRVPIPSRPGCVEVAPAS 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXGATRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
GATRW
Sbjct: 181 SCAAAATTTTTSSWWRRSSPRSTAGATRWRAPSSSCSAPASGAPRRSRRSSTTTARARSS 240
Query: 241 XXXXPTWPSPXXXXXXXXXXXXXXXXXXXXXXXXKFPRGCSTCXXXXXXXXXXXXXXXXX 300
PTWPSP KFPRGCSTC
Sbjct: 241 PTGRPTWPSPSATGCCATSTCTAASSSAATTCSTKFPRGCSTCRSPWRPPPARSTRSTST 300
Query: 301 XXXXXIGVVCSTLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAAPSSSEPGH 360
IGVVCSTLE VRAAPSSSEPGH
Sbjct: 301 ARATTIGVVCSTLEPSSAPSTAAAPRSNSSTSPPAAAAAAWASTPPATVRAAPSSSEPGH 360
>Os11g0175200
Length = 383
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 81/110 (73%), Gaps = 6/110 (5%)
Query: 35 MLMPYATAEREVDDSEYSTSNSGGAKITGAASRSSSGHLVRVSLRLESPPAASGLSFHCS 94
ML YA E E D E STSNSGGAKIT AASRSS GHLVRVSLRLE+PPAAS LSFHCS
Sbjct: 22 MLNHYAELEVE-GDGEDSTSNSGGAKITEAASRSSYGHLVRVSLRLEAPPAASQLSFHCS 80
Query: 95 PCGGSGYGAHHYRPSMYVVAAHGDSVLLEMHYQKEGYQQYGIDYFFYNAG 144
PC S + H PS+ VVAAHGDSVL+EMHY+K G DYF YNAG
Sbjct: 81 PC--SKHRVHG--PSINVVAAHGDSVLVEMHYEK-GENDEHFDYFVYNAG 125
>Os11g0174700
Length = 559
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 69/124 (55%), Gaps = 11/124 (8%)
Query: 30 YPGWVMLMPYATAEREV---DDSEYSTSNSGGAKITG----AASRSSSGHLVRVSLRLES 82
YP WV+L + E E DD + +K+T AASRSS+G+ V VS L++
Sbjct: 25 YPQWVILAEHVPLEDEDEGGDDPNSCFTADAASKVTDTETEAASRSSAGNHVGVSFLLKA 84
Query: 83 PPAASGLSFHCSPCGGSGYGAHHYRPSMYVVAAHGDSVLLEMHYQK-EGY-QQYGIDYFF 140
PPA S L F C P G G G + PSM VVA H DS+LL M Y+K Y G+DYF
Sbjct: 85 PPAVSRLRFRCVPSGSRG-GDRRF-PSMRVVAVHRDSLLLRMQYRKGRAYDNDIGVDYFL 142
Query: 141 YNAG 144
YNAG
Sbjct: 143 YNAG 146
>Os11g0174432
Length = 572
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 30 YPGWVMLMPYATAEREVDDSEYSTSNSGGAKITGAASRSSSGHLVRVSLRLESPPAASGL 89
YP WV+L Y + D + ++ AK A+ SS GH V VSL L++PPA+S +
Sbjct: 20 YPRWVILCRYGEYQGYERDDSFPPFSTPDAKTEAASVFSSGGHHVLVSLCLDAPPASSRV 79
Query: 90 SFHCSPCGGSGYGAHHYRPSMYVVAAHGDSVLLEMHYQKEGYQQYG----IDYFFYNAGD 145
F P G G GA S+ VVAAHGDSVL+ + YQ EGY +YG +DYF YNAG
Sbjct: 80 CFDFFPRIGGGRGA-----SLAVVAAHGDSVLVRLSYQGEGY-RYGDDGVLDYFVYNAGS 133
Query: 146 GDED 149
D
Sbjct: 134 AAAD 137
>Os11g0174366
Length = 604
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 8/103 (7%)
Query: 47 DDSEYSTSNSGGA-KITGAASRSSSGHLVRVSLRLESPPAASGLSFHCSPCGGSGYGAHH 105
DDS S +GG+ T A+ R+S+GH+VR+SL E+PPA+S + + SP G G
Sbjct: 42 DDSSNPCSAAGGSCAETEASCRNSAGHVVRLSLCREAPPASSRMWYTSSPSHDEGGG--- 98
Query: 106 YRPSMYVVAAHGDSVLLEMHYQKEGYQ--QYGIDYFFYNAGDG 146
P + VVAAH DSVLL+MHY+ E + +YG+ +F Y+AGD
Sbjct: 99 --PLVCVVAAHRDSVLLQMHYKNEARRGGEYGLYHFVYSAGDA 139
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,707,362
Number of extensions: 267214
Number of successful extensions: 877
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 6
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)