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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0175300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0313) R2 : 0.222
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.42 (0.302) R2dE : 0.22 R2E : 0.213
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.127 (0.0659) R2dN8 : 0.00827 R2N8 : 0.00173
σ : 0.587
deviance : 159
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.409
memory length : 275
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 0.965

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.25 0.584 2.87 -0.00767 0.0481 3.62 -0.0543 -9.12 0.138 21.2 8.5 188 11 1.18
158.75 0.587 2.87 0.068 0.0469 3.47 -0.00915 -- 0.136 20.3 4.405 275 10.8 0.974
154.26 0.578 2.87 -0.0054 0.0497 3.62 -- -9.11 0.139 20.5 8.501 188 11 1.18
158.74 0.587 2.87 0.0678 0.0499 3.44 -- -- 0.136 20.6 4.403 275 10.8 0.97
154.39 0.579 2.87 -0.00537 -- 3.59 -- -9.06 0.138 -- 8.483 188 11 1.18
202.84 0.668 2.88 -0.0356 0.108 -- -0.216 -- 0.0795 13.9 -- -- -- --
203.02 0.667 2.88 -0.0422 0.108 -- -- -- 0.0783 14.2 -- -- -- --
158.88 0.587 2.87 0.0657 -- 3.43 -- -- 0.134 -- 4.402 275 10.8 0.954
158.86 0.587 2.87 -- 0.0498 3.44 -- -- 0.128 20.7 4.411 268 10.8 0.978
203.72 0.667 2.88 -0.0467 -- -- -- -- 0.0757 -- -- -- -- --
203.06 0.667 2.88 -- 0.109 -- -- -- 0.083 14.2 -- -- -- --
159 0.587 2.87 -- -- 3.42 -- -- 0.127 -- 4.409 275 10.8 0.965
203.77 0.666 2.88 -- -- -- -- -- 0.0809 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.29 radiation 10.0 270 < th dose dependent rect. 11 1
2 162.69 precipitation 0.1 1440 > th dose independent rect. 12 1
4 162.69 precipitation 0.1 1440 > th dose dependent rect. 12 1
6 163.17 wind 1.0 1440 < th dose independent rect. 17 1
9 163.40 wind 1.0 1440 < th dose dependent rect. 17 1
10 163.63 wind 1.0 1440 > th dose independent rect. 17 1
16 176.79 radiation 10.0 90 < th dose independent rect. 11 2
30 184.96 wind 9.0 14400 > th dose independent rect. 1 1
32 184.96 wind 9.0 14400 > th dose dependent rect. 1 1
56 188.57 wind 3.0 10 < th dose independent rect. 12 1
74 191.42 wind 3.0 10 < th dose dependent rect. 12 1
76 191.55 radiation 1.0 10 < th dose independent rect. 13 1
87 191.55 radiation 1.0 10 < th dose dependent rect. 13 1
110 192.20 humidity 80.0 90 > th dose dependent rect. 12 1
114 192.26 humidity 80.0 90 > th dose independent rect. 12 1
117 192.32 temperature 30.0 4320 > th dose independent rect. 12 3
145 192.83 temperature 30.0 4320 < th dose independent rect. 12 3
174 193.69 temperature 30.0 4320 > th dose independent rect. 12 5
197 194.17 temperature 30.0 4320 < th dose independent rect. 12 5
199 194.36 temperature 30.0 4320 > th dose independent rect. 16 1
239 194.84 temperature 30.0 4320 < th dose independent rect. 12 13
251 194.85 temperature 30.0 4320 < th dose independent rect. 12 20
292 194.98 temperature 30.0 4320 < th dose independent rect. 16 1
318 195.30 humidity 80.0 10 > th dose independent rect. 14 1
345 195.48 radiation 10.0 90 < th dose independent rect. 10 19
407 195.94 temperature 30.0 4320 > th dose independent sin 16 NA
409 195.94 radiation 20.0 90 < th dose dependent rect. 10 19
428 196.13 wind 1.0 14400 < th dose dependent rect. 22 1
429 196.15 wind 9.0 14400 > th dose dependent rect. 9 1
432 196.17 precipitation 0.1 14400 > th dose independent rect. 11 2
434 196.17 precipitation 0.1 14400 > th dose dependent rect. 11 2
435 196.18 temperature 30.0 4320 < th dose independent sin 16 NA
440 196.19 radiation 20.0 90 < th dose dependent rect. 19 19
464 196.29 humidity 70.0 30 > th dose independent rect. 11 4
499 196.48 precipitation 0.1 14400 < th dose independent rect. 11 1
501 196.48 precipitation 0.1 14400 < th dose dependent rect. 11 1
547 196.60 wind 9.0 14400 < th dose independent rect. 9 1
553 196.64 radiation 10.0 270 < th dose independent rect. 8 1
609 196.82 temperature 30.0 4320 < th dose independent rect. 7 10
617 196.83 temperature 30.0 4320 < th dose independent rect. 23 18
619 196.83 temperature 30.0 4320 < th dose independent rect. 20 21
638 196.92 atmosphere 995.0 30 > th dose independent sin 6 NA
639 196.92 radiation 20.0 90 < th dose independent rect. 10 17
718 197.11 temperature 30.0 4320 > th dose independent rect. 16 23
720 197.12 temperature 30.0 4320 > th dose independent no NA NA
826 197.13 radiation 10.0 270 < th dose independent rect. 7 21
844 197.18 temperature 30.0 4320 < th dose independent rect. 16 23
845 197.18 atmosphere 1000.0 90 < th dose dependent rect. 14 1
869 197.22 radiation 20.0 90 < th dose dependent rect. 23 15
880 197.24 temperature 25.0 4320 > th dose independent rect. 22 2
892 197.25 temperature 30.0 4320 < th dose independent rect. 7 18
906 197.26 radiation 20.0 90 < th dose independent rect. 1 13
938 197.26 temperature 30.0 4320 < th dose independent rect. 24 21
954 197.27 temperature 30.0 4320 < th dose independent no NA NA
993 197.28 wind 9.0 14400 > th dose independent rect. 9 1
995 197.28 radiation 20.0 90 < th dose independent rect. 23 15