BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0169100 Os11g0169100|AK072561
         (862 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0169100  Sec1-like protein family protein                   1629   0.0  

>Os11g0169100 Sec1-like protein family protein
          Length = 862

 Score = 1629 bits (4219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 809/862 (93%), Positives = 809/862 (93%)

Query: 1   MGSVDLIAACLDSIRQIGDEIADALVYLDAGTLEAFQFIGAFPLLLELGARAICSLENAS 60
           MGSVDLIAACLDSIRQIGDEIADALVYLDAGTLEAFQFIGAFPLLLELGARAICSLENAS
Sbjct: 1   MGSVDLIAACLDSIRQIGDEIADALVYLDAGTLEAFQFIGAFPLLLELGARAICSLENAS 60

Query: 61  PLDAAAEWHSSFAHPARKIVVITSRLLSDAHRYILRCLGNHGTISHCTVLTAISEVGHSA 120
           PLDAAAEWHSSFAHPARKIVVITSRLLSDAHRYILRCLGNHGTISHCTVLTAISEVGHSA
Sbjct: 61  PLDAAAEWHSSFAHPARKIVVITSRLLSDAHRYILRCLGNHGTISHCTVLTAISEVGHSA 120

Query: 121 YVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHKDTTFYTGKDFTSDGGRYSNWESGV 180
           YVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHKDTTFYTGKDFTSDGGRYSNWESGV
Sbjct: 121 YVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHKDTTFYTGKDFTSDGGRYSNWESGV 180

Query: 181 HYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAES 240
           HYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAES
Sbjct: 181 HYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAES 240

Query: 241 CLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHLASKMDLKLDIFSLGDTSK 300
           CLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHLASKMDLKLDIFSLGDTSK
Sbjct: 241 CLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTAQFLYHLASKMDLKLDIFSLGDTSK 300

Query: 301 VIGKLMMDMSSLYDVGRNKRSAGLLIVDRTLDLLTPCFHGDSFLDRMLSSLTRKEGTSSY 360
           VIGKLMMDMSSLYDVGRNKRSAGLLIVDRTLDLLTPCFHGDSFLDRMLSSLTRKEGTSSY
Sbjct: 301 VIGKLMMDMSSLYDVGRNKRSAGLLIVDRTLDLLTPCFHGDSFLDRMLSSLTRKEGTSSY 360

Query: 361 FVSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSGWNSAEV 420
           FVSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSGWNSAEV
Sbjct: 361 FVSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSGWNSAEV 420

Query: 421 ESEVTWLPDYADKAHDDKLSSQHGSLNGSFLSNYAGVCYLESLLDRGAKDGLMLIKKWLM 480
           ESEVTWLPDYADKAHDDKLSSQHGSLNGSFLSNYAGVCYLESLLDRGAKDGLMLIKKWLM
Sbjct: 421 ESEVTWLPDYADKAHDDKLSSQHGSLNGSFLSNYAGVCYLESLLDRGAKDGLMLIKKWLM 480

Query: 481 EALQHEKLSFPSKGRQGAASVSELHSMVQMLSRDQLSLVRNRGVIXXXXXXXXXXXXPQS 540
           EALQHEKLSFPSKGRQGAASVSELHSMVQMLSRDQLSLVRNRGVI            PQS
Sbjct: 481 EALQHEKLSFPSKGRQGAASVSELHSMVQMLSRDQLSLVRNRGVIQLALAAEMALQEPQS 540

Query: 541 SRWDAFTSAERILSVTSAETTQSLASELRDFINTSTSVESHKQANKTESSQGLLSFQDVL 600
           SRWDAFTSAERILSVTSAETTQSLASELRDFINTSTSVESHKQANKTESSQGLLSFQDVL
Sbjct: 541 SRWDAFTSAERILSVTSAETTQSLASELRDFINTSTSVESHKQANKTESSQGLLSFQDVL 600

Query: 601 LLTIIGYILAGENFPTSIAGGPFSWEDERSLKDIVVDSILDRPSSVKLRFLVGLENELEA 660
           LLTIIGYILAGENFPTSIAGGPFSWEDERSLKDIVVDSILDRPSSVKLRFLVGLENELEA
Sbjct: 601 LLTIIGYILAGENFPTSIAGGPFSWEDERSLKDIVVDSILDRPSSVKLRFLVGLENELEA 660

Query: 661 KARPKDGDKSNDSIEASXXXXXXXXXXXXXXXXXXXXXXXXXEAYGDMQLKLEVRDRVDQ 720
           KARPKDGDKSNDSIEAS                         EAYGDMQLKLEVRDRVDQ
Sbjct: 661 KARPKDGDKSNDSIEASKSTDDFDDQWDSWGDDDDNTDDQKDEAYGDMQLKLEVRDRVDQ 720

Query: 721 LFKFFHNLSSMRLRNQTLGEGLAALSRFETDIYSXXXXXXXXXXXXXXXXDIPGLEYHSS 780
           LFKFFHNLSSMRLRNQTLGEGLAALSRFETDIYS                DIPGLEYHSS
Sbjct: 721 LFKFFHNLSSMRLRNQTLGEGLAALSRFETDIYSRKGLLYKLLLAVLARYDIPGLEYHSS 780

Query: 781 AVGRLFKSGLGRFGLGQSKPSFGDQSILIVFVVGGINALEVREVMKAISDSSRPDVELIL 840
           AVGRLFKSGLGRFGLGQSKPSFGDQSILIVFVVGGINALEVREVMKAISDSSRPDVELIL
Sbjct: 781 AVGRLFKSGLGRFGLGQSKPSFGDQSILIVFVVGGINALEVREVMKAISDSSRPDVELIL 840

Query: 841 GGTTLLTPDDMFELMLGSSSFS 862
           GGTTLLTPDDMFELMLGSSSFS
Sbjct: 841 GGTTLLTPDDMFELMLGSSSFS 862



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,550,394
Number of extensions: 1059214
Number of successful extensions: 2416
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2413
Number of HSP's successfully gapped: 1
Length of query: 862
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 753
Effective length of database: 11,344,475
Effective search space: 8542389675
Effective search space used: 8542389675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)