Os11g0169100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sec1-like protein family protein.
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Os11g0169100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sec1-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.68 | 0.303 | 8.28 | 0.489 | 0.267 | -0.562 | 0.617 | -0.221 | 0.19 | 13.3 | 28.7 | 4815 | -- | -- |
| 41.69 | 0.301 | 8.29 | 0.436 | 0.267 | -0.58 | 0.601 | -- | 0.181 | 13.4 | 28.8 | 4781 | -- | -- |
| 43.21 | 0.306 | 8.28 | 0.504 | 0.265 | -0.558 | -- | -0.195 | 0.192 | 12.9 | 28.76 | 4804 | -- | -- |
| 43.22 | 0.306 | 8.29 | 0.46 | 0.264 | -0.575 | -- | -- | 0.181 | 12.9 | 28.8 | 4781 | -- | -- |
| 47.54 | 0.321 | 8.29 | 0.445 | -- | -0.569 | -- | 0.0401 | 0.179 | -- | 28.8 | 4779 | -- | -- |
| 53.67 | 0.343 | 8.28 | 0.611 | 0.256 | -- | 0.592 | -- | 0.217 | 13.9 | -- | -- | -- | -- |
| 55.01 | 0.347 | 8.28 | 0.629 | 0.255 | -- | -- | -- | 0.22 | 13.6 | -- | -- | -- | -- |
| 47.54 | 0.321 | 8.29 | 0.448 | -- | -0.563 | -- | -- | 0.178 | -- | 28.7 | 4776 | -- | -- |
| 48.01 | 0.323 | 8.31 | -- | 0.257 | -0.689 | -- | -- | 0.0913 | 12.9 | 27.9 | 4762 | -- | -- |
| 59 | 0.359 | 8.28 | 0.618 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 65.43 | 0.378 | 8.29 | -- | 0.244 | -- | -- | -- | 0.15 | 13.5 | -- | -- | -- | -- |
| 51.93 | 0.336 | 8.31 | -- | -- | -0.678 | -- | -- | 0.103 | -- | 27.73 | 4741 | -- | -- |
| 69.09 | 0.388 | 8.3 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 2 | 40.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 5 | 40.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 9 | 40.86 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 19 | 40.96 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 36 | 41.31 | temperature | 10.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 38 | 41.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 41.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 52 | 41.41 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 62 | 41.48 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 67 | 41.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 72 | 41.52 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 90 | 41.63 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 96 | 41.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 122 | 41.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 162 | 41.89 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 165 | 41.90 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 170 | 41.90 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 215 | 42.00 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 225 | 42.03 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 229 | 42.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 230 | 42.04 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 252 | 42.09 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 259 | 42.09 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 267 | 42.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 314 | 42.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 358 | 42.26 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 379 | 42.29 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 393 | 42.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 433 | 42.38 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 485 | 42.45 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 506 | 42.47 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 531 | 42.50 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 554 | 42.52 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 560 | 42.53 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 566 | 42.53 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 585 | 42.55 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 613 | 42.56 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 694 | 42.61 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 8 | 14 |
| 706 | 42.62 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 757 | 42.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 773 | 42.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 775 | 42.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 797 | 42.67 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 799 | 42.67 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 801 | 42.67 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 802 | 42.67 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 16 |
| 847 | 42.68 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 894 | 42.70 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 912 | 42.71 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 965 | 42.73 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 999 | 42.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |