BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0166300 Os11g0166300|Os11g0166300
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0166300 Conserved hypothetical protein 607 e-174
Os11g0165000 71 1e-12
Os11g0164801 68 9e-12
>Os11g0166300 Conserved hypothetical protein
Length = 307
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/307 (96%), Positives = 296/307 (96%)
Query: 1 MAAATGYGDAPTADDLAAYDQLLGLRHTRHMAEVFAVRLPHAAGLRRPPPCGTISFCGGN 60
MAAATGYGDAPTADDLAAYDQLLGLRHTRHMAEVFAVRLPHAAGLRRPPPCGTISFCGGN
Sbjct: 1 MAAATGYGDAPTADDLAAYDQLLGLRHTRHMAEVFAVRLPHAAGLRRPPPCGTISFCGGN 60
Query: 61 HCNDVIYSRSRTDDSTYPPPCDTHGFGTYYFAHIEYVLVIKTVSEDSGNIMLTGPSFATS 120
HCNDVIYSRSRTDDSTYPPPCDTHGFGTYYFAHIEYVLVIKTVSEDSGNIMLTGPSFATS
Sbjct: 61 HCNDVIYSRSRTDDSTYPPPCDTHGFGTYYFAHIEYVLVIKTVSEDSGNIMLTGPSFATS 120
Query: 121 AYAPIIFTLCLHDGSQXXXXXXXXXXXIYNTCNGLFNNYNSTIIETVNTGYGPAEVSYAV 180
AYAPIIFTLCLHDGSQ IYNTCNGLFNNYNSTIIETVNTGYGPAEVSYAV
Sbjct: 121 AYAPIIFTLCLHDGSQEEDNNENEVEVIYNTCNGLFNNYNSTIIETVNTGYGPAEVSYAV 180
Query: 181 LTNAVEGQVTVKLVRRDEHNDPTAITGVLGRIITRSKLLNVGCVLFYSDFGSIPHIGSDG 240
LTNAVEGQVTVKLVRRDEHNDPTAITGVLGRIITRSKLLNVGCVLFYSDFGSIPHIGSDG
Sbjct: 181 LTNAVEGQVTVKLVRRDEHNDPTAITGVLGRIITRSKLLNVGCVLFYSDFGSIPHIGSDG 240
Query: 241 LIPLARRALAVPAMMPLDLRSSSGDEIVRAAVEFDPTTSDQHVERVIGMGGHEIQVTISW 300
LIPLARRALAVPAMMPLDLRSSSGDEIVRAAVEFDPTTSDQHVERVIGMGGHEIQVTISW
Sbjct: 241 LIPLARRALAVPAMMPLDLRSSSGDEIVRAAVEFDPTTSDQHVERVIGMGGHEIQVTISW 300
Query: 301 LDFPWFD 307
LDFPWFD
Sbjct: 301 LDFPWFD 307
>Os11g0165000
Length = 119
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 107 SGNIMLTGPSFATSAYAPIIFTLCLHDGSQXXXXXXXXXXX---IYNTCNGLFNNYNSTI 163
GN++LTGPSFA S Y I + LHDGSQ NTC F +YNS I
Sbjct: 38 KGNLVLTGPSFAISVYVGIDL-INLHDGSQEEEDDDEEDNVGEIFCNTCTCDFTDYNSAI 96
Query: 164 IETVNTGYGPAEVSYAVLTNAVE 186
+ETV T YGPAEV+Y VLTNA +
Sbjct: 97 VETVITWYGPAEVTYVVLTNAFQ 119
>Os11g0164801
Length = 323
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 104 SEDSGNIMLTGPSFATSAYAPIIFTLCLHDGS-QXXXXXXXXXXXIYNTCNGLFNNYNST 162
S G+IMLT P FAT AYAP+I T CLHDGS Q I NTCNGLF +YN
Sbjct: 61 SNSPGSIMLTSPLFATLAYAPVICTHCLHDGSEQNEDNDENEVEIICNTCNGLFTDYNMA 120
Query: 163 IIETV 167
IIE +
Sbjct: 121 IIEAI 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,523,458
Number of extensions: 483869
Number of successful extensions: 955
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 4
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)