BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0157300 Os11g0157300|AK071072
         (342 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0157300  Harpin-induced 1 domain containing protein          225   3e-59

>Os11g0157300 Harpin-induced 1 domain containing protein
          Length = 342

 Score =  225 bits (574), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 121/171 (70%)

Query: 172 TFIVWLLLRPRVPAFSLASLTLSRVXXXXXXXXXXXXXXXXXXXDNPNSKLTVTYFXXXX 231
           TFIVWLLLRPRVPAFSLASLTLSRV                   DNPNSKLTVTYF    
Sbjct: 172 TFIVWLLLRPRVPAFSLASLTLSRVAYSAANSSLSASFDASLLADNPNSKLTVTYFSPLA 231

Query: 232 XXXXXXXXXXXXXTLPPFAQPPRNTTTLAFRLEVDGAYVGPDDAAPLKGGGVGTMEVQVR 291
                        TLPPFAQPPRNTTTLAFRLEVDGAYVGPDDAAPLKGGGVGTMEVQVR
Sbjct: 232 SVSLAPSSPIAVATLPPFAQPPRNTTTLAFRLEVDGAYVGPDDAAPLKGGGVGTMEVQVR 291

Query: 292 LAAVAVFDXXXXXXXXXXXXXXCDGVPVAFRGKNGMEAAFTGPARRCDVVL 342
           LAAVAVFD              CDGVPVAFRGKNGMEAAFTGPARRCDVVL
Sbjct: 292 LAAVAVFDRGGWRTRRRVMRVMCDGVPVAFRGKNGMEAAFTGPARRCDVVL 342



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,181,203
Number of extensions: 142357
Number of successful extensions: 447
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)