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Os11g0157300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.67 (0.0183) R2 : 0.297
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.616 (0.0475) R2dC : 0.26 R2C : 0.255
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.177 (0.0385) R2dN8 : 0.042 R2N8 : 0.037
σ : 0.345
deviance : 54.49
__
_____
C
peak time of C : 4.76
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.78 0.293 9.58 1.11 0.594 0.107 0.61 2.17 0.374 4.99 10.17 3065 -- --
41.77 0.301 9.64 0.581 0.597 0.222 0.744 -- 0.29 5.12 30.75 3648 -- --
39.59 0.293 9.58 1.14 0.595 0.0892 -- 2.19 0.378 4.82 7.526 2896 -- --
40.57 0.297 9.69 0.258 0.606 0.397 -- -- 0.0737 4.7 30.37 47520 -- --
55.3 0.348 9.62 0.89 -- -0.668 -- 0.767 0.393 -- 17.21 2805 -- --
43.26 0.308 9.65 0.621 0.601 -- 0.682 -- 0.249 4.99 -- -- -- --
44.39 0.312 9.65 0.619 0.605 -- -- -- 0.246 4.79 -- -- -- --
55.91 0.35 9.64 0.77 -- -0.643 -- -- 0.359 -- 17.21 2805 -- --
41.09 0.299 9.72 -- 0.597 0.526 -- -- -0.0264 4.88 25.8 47520 -- --
63.72 0.373 9.66 0.642 -- -- -- -- 0.262 -- -- -- -- --
54.49 0.345 9.67 -- 0.616 -- -- -- 0.177 4.76 -- -- -- --
59.89 0.36 9.72 -- -- 0.55 -- -- -0.0233 -- 25.5 47520 -- --
74.58 0.403 9.68 -- -- -- -- -- 0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.93 wind 1.0 14400 < th dose dependent rect. 23 2
2 37.29 wind 1.0 14400 < th dose dependent rect. 21 5
5 37.34 wind 1.0 14400 < th dose dependent rect. 19 7
8 37.44 radiation 1.0 43200 > th dose independent rect. 13 4
10 37.45 radiation 1.0 43200 < th dose independent rect. 13 4
16 37.53 radiation 1.0 43200 < th dose dependent rect. 16 1
17 37.54 precipitation 0.1 43200 < th dose independent rect. 7 7
18 37.54 precipitation 0.1 43200 < th dose dependent rect. 7 7
19 37.55 wind 5.0 43200 > th dose independent rect. 21 7
22 37.55 humidity 90.0 43200 > th dose dependent rect. 10 3
23 37.56 precipitation 0.1 43200 > th dose independent rect. 7 7
28 37.57 humidity 80.0 43200 < th dose independent rect. 17 1
36 37.59 humidity 90.0 43200 > th dose dependent rect. 10 1
42 37.60 wind 5.0 43200 > th dose dependent rect. 21 12
45 37.61 wind 5.0 43200 > th dose independent rect. 21 12
49 37.62 wind 1.0 14400 < th dose dependent rect. 11 1
50 37.62 wind 5.0 43200 > th dose dependent rect. 21 7
55 37.64 radiation 1.0 14400 > th dose independent rect. 18 1
59 37.64 precipitation 0.1 43200 > th dose independent rect. 7 4
63 37.64 wind 5.0 43200 < th dose independent rect. 21 7
69 37.64 precipitation 0.1 43200 > th dose dependent rect. 7 4
71 37.65 humidity 80.0 43200 > th dose independent rect. 17 1
72 37.65 precipitation 0.1 43200 > th dose independent rect. 4 9
74 37.65 humidity 90.0 43200 > th dose dependent rect. 9 6
75 37.66 precipitation 0.1 43200 < th dose independent rect. 7 4
78 37.66 precipitation 0.1 43200 < th dose dependent rect. 7 4
86 37.67 precipitation 0.1 43200 > th dose dependent rect. 5 8
95 37.69 radiation 1.0 43200 < th dose dependent rect. 4 1
96 37.69 wind 5.0 43200 > th dose dependent rect. 21 9
99 37.70 humidity 90.0 43200 > th dose independent rect. 10 4
120 37.71 wind 5.0 43200 < th dose independent rect. 21 12
137 37.73 wind 7.0 43200 > th dose dependent rect. 21 1
154 37.75 wind 1.0 43200 < th dose independent rect. 2 3
166 37.76 radiation 1.0 43200 > th dose independent rect. 6 11
169 37.76 radiation 1.0 43200 < th dose dependent rect. 19 10
176 37.77 radiation 1.0 43200 < th dose independent rect. 6 11
183 37.78 wind 7.0 43200 < th dose independent rect. 21 1
189 37.78 radiation 1.0 43200 < th dose dependent rect. 22 7
192 37.79 wind 7.0 43200 > th dose independent rect. 21 1
198 37.80 precipitation 0.1 43200 < th dose independent rect. 24 1
201 37.80 precipitation 0.1 43200 < th dose dependent rect. 24 1
220 37.83 wind 5.0 43200 > th dose independent rect. 8 1
221 37.83 wind 5.0 43200 < th dose independent rect. 8 1
223 37.83 wind 1.0 43200 > th dose independent rect. 2 3
241 37.85 humidity 90.0 43200 < th dose independent rect. 12 1
254 37.86 radiation 10.0 14400 < th dose dependent rect. 9 2
258 37.87 precipitation 0.1 43200 < th dose independent rect. 21 4
259 37.87 precipitation 0.1 43200 < th dose dependent rect. 21 4
260 37.88 radiation 10.0 43200 > th dose independent rect. 10 1
274 37.89 precipitation 0.1 43200 > th dose dependent rect. 21 5
276 37.90 precipitation 0.1 43200 > th dose independent rect. 24 1
283 37.90 precipitation 0.1 43200 > th dose dependent rect. 24 1
286 37.91 precipitation 0.1 43200 > th dose independent rect. 21 4
293 37.91 wind 5.0 43200 > th dose dependent rect. 8 1
331 37.98 precipitation 0.1 43200 < th dose independent rect. 21 2
339 37.98 precipitation 0.1 43200 < th dose dependent rect. 21 2
344 37.99 precipitation 0.1 43200 > th dose independent rect. 21 2
358 38.00 wind 5.0 43200 > th dose independent sin 8 NA
359 38.00 radiation 1.0 43200 > th dose independent rect. 6 1
366 38.01 radiation 1.0 43200 < th dose independent rect. 6 1
368 38.01 wind 7.0 43200 < th dose independent rect. 21 4
408 38.04 precipitation 0.1 43200 > th dose dependent rect. 22 1
410 38.04 wind 5.0 43200 > th dose dependent rect. 1 8
432 38.07 humidity 90.0 43200 < th dose independent rect. 10 4
449 38.08 radiation 10.0 14400 < th dose independent rect. 10 1
478 38.10 wind 5.0 43200 < th dose independent sin 8 NA
479 38.10 temperature 20.0 43200 < th dose independent rect. 23 1
500 38.11 wind 1.0 43200 < th dose dependent rect. 2 3
502 38.12 temperature 20.0 43200 > th dose independent rect. 6 1
503 38.12 temperature 20.0 43200 < th dose independent rect. 6 1
525 38.13 wind 1.0 43200 < th dose dependent rect. 10 15
527 38.14 humidity 90.0 14400 > th dose independent rect. 23 1
542 38.15 temperature 20.0 43200 > th dose independent rect. 23 1
549 38.15 radiation 1.0 43200 < th dose independent rect. 18 11
553 38.16 temperature 20.0 43200 < th dose independent rect. 2 1
557 38.16 temperature 20.0 43200 < th dose independent rect. 23 5
566 38.17 wind 5.0 43200 < th dose independent rect. 1 1
567 38.17 temperature 20.0 43200 > th dose independent rect. 23 4
596 38.18 temperature 20.0 43200 > th dose independent rect. 23 10
608 38.18 wind 1.0 43200 < th dose dependent rect. 4 1
613 38.19 temperature 20.0 43200 > th dose independent sin 8 NA
615 38.19 temperature 20.0 43200 > th dose independent rect. 2 1
658 38.20 temperature 20.0 43200 < th dose independent sin 7 NA
680 38.20 temperature 20.0 43200 > th dose independent rect. 2 8
707 38.20 temperature 20.0 43200 > th dose independent rect. 16 15
732 38.21 temperature 20.0 43200 > th dose independent rect. 3 6
735 38.21 temperature 20.0 43200 < th dose independent rect. 2 7
758 38.21 temperature 20.0 43200 > th dose independent rect. 16 13
805 38.22 wind 5.0 43200 > th dose independent rect. 1 1
992 38.23 wind 1.0 14400 < th dose dependent rect. 8 18
993 38.24 temperature 20.0 43200 > th dose independent no NA NA