BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0153100 Os11g0153100|AK063701
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0153100  Conserved hypothetical protein                      171   2e-43
Os12g0466550  Conserved hypothetical protein                       98   3e-21

>Os11g0153100 Conserved hypothetical protein
          Length = 143

 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 87/130 (66%)

Query: 14  QVXXXXXXXXVQRWQRWEAASTAMAALSPPWQRRXXXXXXCGGRPEVPSLRQIQREEGLR 73
           QV        VQRWQRWEAASTAMAALSPPWQRR      CGGRPEVPSLRQIQREEGLR
Sbjct: 14  QVAAAGGDGAVQRWQRWEAASTAMAALSPPWQRRAAASAACGGRPEVPSLRQIQREEGLR 73

Query: 74  SRATTKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVACNPTCLLLPFVCQQIHTPSFY 133
           SRATTKC                             HVACNPTCLLLPFVCQQIHTPSFY
Sbjct: 74  SRATTKCAGRLGAVPAAAPRRARPQARRPRQALPPPHVACNPTCLLLPFVCQQIHTPSFY 133

Query: 134 KMFDTVNFFK 143
           KMFDTVNFFK
Sbjct: 134 KMFDTVNFFK 143



>Os12g0466550 Conserved hypothetical protein
          Length = 154

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 28  QRWEAASTAMAALSPPWQRRXXXXXXCGGR----PEVPSLRQIQREEGLRSRATTKCXXX 83
           QR EAAS AM A SPP Q+R      CGGR    PE PSLRQI+REEGL+SRA TKC   
Sbjct: 49  QRREAASAAMVAPSPPRQQRAAASAACGGRSGSRPEAPSLRQIRREEGLQSRAATKCAGC 108

Query: 84  XXXXXXXXXXXXXXXXXXXXXXXXXXHVACNPTCLLLPFVCQQIH 128
                                     HVACNPTCLLLPFVCQQIH
Sbjct: 109 LDAVPAAGPRRARPQARQPRQALLPPHVACNPTCLLLPFVCQQIH 153



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.134    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,131,602
Number of extensions: 73789
Number of successful extensions: 319
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)