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Os11g0153100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.03 (0.0361) R2 : 0.798
β1 : 1.64 (0.131) R2dD : 0.0694 R2D : 0.0608
β2 : 2 (0.124) R2dC : 0.229 R2C : 0.52
β3 : 1.41 (0.0909) R2dE : 0.207 R2E : 0.501
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0766) R2dN8 : 0.0137 R2N8 : -0.00568
σ : 0.675
deviance : 207.13
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C
peak time of C : 20.8
E
wheather : radiation
threshold : 3.823
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.83 0.676 7.03 1.6 1.99 1.45 -0.468 0.48 0.366 20.7 3.823 10 -- --
207.13 0.675 7.03 1.64 2 1.41 0.0122 -- 0.372 20.9 3.823 10 -- --
206.77 0.675 7.03 1.63 2 1.41 -- 0.239 0.37 20.9 3.823 10 -- --
207.13 0.675 7.03 1.64 2 1.41 -- -- 0.372 20.8 3.823 10 -- --
319.28 0.832 6.99 1.55 -- 2.5 -- 0.103 0.331 -- 5.492 3 -- --
249.28 0.74 7.08 1.58 3.43 -- 0.241 -- 0.289 22.1 -- -- -- --
249.51 0.74 7.08 1.57 3.42 -- -- -- 0.289 22.1 -- -- -- --
318.97 0.832 6.96 1.58 -- 2.49 -- -- 0.389 -- 5.39 3 -- --
275.42 0.773 7.05 -- 1.96 1.51 -- -- 0.233 20.7 5.41 8 -- --
957.08 1.45 6.99 1.61 -- -- -- -- 0.293 -- -- -- -- --
314.49 0.83 7.12 -- 3.43 -- -- -- 0.114 22.1 -- -- -- --
383.89 0.913 7 -- -- 2.5 -- -- 0.213 -- 5.655 2 -- --
1025.82 1.49 7.03 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.88 temperature 10.0 90 > th dose dependent rect. 4 13
2 204.61 radiation 10.0 30 < th dose dependent rect. 7 21
5 206.03 temperature 15.0 10 > th dose dependent rect. 5 13
18 209.00 temperature 25.0 10 > th dose dependent rect. 12 6
19 209.04 radiation 1.0 30 < th dose independent rect. 6 22
26 209.56 humidity 80.0 1440 < th dose independent rect. 7 8
31 209.97 humidity 80.0 1440 < th dose independent rect. 11 3
34 210.20 humidity 80.0 1440 > th dose independent rect. 11 3
36 210.30 humidity 80.0 720 < th dose independent rect. 12 1
37 210.42 humidity 90.0 720 < th dose dependent rect. 12 1
42 210.59 humidity 80.0 1440 > th dose independent rect. 7 8
49 210.68 radiation 1.0 720 < th dose dependent rect. 22 20
55 210.84 humidity 70.0 10 > th dose dependent rect. 8 12
66 211.34 humidity 80.0 1440 < th dose independent sin 1 NA
70 211.47 radiation 1.0 90 < th dose independent rect. 6 13
73 211.54 humidity 80.0 1440 < th dose independent rect. 7 13
87 211.83 humidity 50.0 720 > th dose dependent rect. 7 20
88 211.85 humidity 80.0 1440 > th dose independent sin 1 NA
93 211.95 radiation 1.0 30 > th dose independent rect. 5 13
104 211.98 radiation 1.0 10 > th dose independent rect. 12 19
112 212.13 radiation 20.0 10 < th dose dependent sin 15 NA
115 212.20 radiation 1.0 90 < th dose dependent rect. 6 13
117 212.27 humidity 80.0 1440 > th dose independent rect. 7 13
131 212.37 radiation 1.0 10 < th dose dependent no NA NA
132 212.37 radiation 1.0 10 < th dose dependent rect. 11 21
138 212.37 radiation 1.0 10 < th dose dependent rect. 13 23
139 212.37 radiation 1.0 10 < th dose dependent rect. 15 23
140 212.39 radiation 1.0 720 > th dose independent rect. 10 5
151 212.56 radiation 1.0 10 > th dose independent no NA NA
152 212.56 radiation 1.0 10 < th dose independent no NA NA
190 212.56 radiation 1.0 10 < th dose independent rect. 11 21
215 212.56 radiation 1.0 10 < th dose independent rect. 13 23
216 212.56 radiation 1.0 10 < th dose independent rect. 15 23
304 212.79 radiation 30.0 720 < th dose independent rect. 15 4
307 212.82 humidity 70.0 1440 > th dose dependent rect. 11 3
310 212.83 radiation 1.0 30 < th dose independent rect. 17 23
321 212.94 radiation 1.0 30 < th dose independent rect. 13 19
329 212.94 radiation 1.0 30 > th dose dependent rect. 12 19
335 212.99 radiation 1.0 10 < th dose dependent rect. 13 19
344 213.00 radiation 1.0 10 < th dose dependent rect. 17 23
368 213.19 precipitation 0.1 720 < th dose independent rect. 19 20
369 213.19 precipitation 0.1 720 < th dose dependent rect. 19 20
389 213.25 wind 7.0 43200 > th dose independent rect. 15 1
413 213.39 radiation 1.0 30 < th dose independent rect. 11 17
426 213.52 radiation 1.0 43200 < th dose dependent rect. 21 4
429 213.56 temperature 25.0 30 > th dose independent rect. 12 6
431 213.56 radiation 1.0 10 < th dose dependent rect. 15 21
441 213.59 wind 7.0 43200 < th dose independent rect. 15 1
442 213.59 precipitation 0.1 720 < th dose independent rect. 11 20
443 213.59 precipitation 0.1 720 < th dose dependent rect. 11 20
449 213.63 radiation 1.0 10 < th dose independent rect. 15 21
457 213.70 radiation 1.0 30 < th dose independent rect. 13 15
469 213.74 humidity 90.0 1440 < th dose dependent rect. 2 17
472 213.77 humidity 70.0 1440 > th dose independent rect. 15 19
473 213.77 humidity 90.0 1440 < th dose dependent rect. 8 11
476 213.78 humidity 90.0 1440 < th dose dependent rect. 5 14
503 213.87 humidity 90.0 1440 < th dose dependent rect. 11 3
504 213.87 radiation 1.0 43200 < th dose dependent rect. 21 6
519 213.94 humidity 90.0 1440 < th dose dependent sin 0 NA
520 213.94 humidity 60.0 1440 > th dose dependent rect. 8 11
539 214.02 radiation 1.0 30 < th dose independent rect. 15 17
548 214.03 radiation 1.0 10 < th dose dependent sin 23 NA
563 214.13 humidity 50.0 1440 > th dose dependent rect. 11 3
568 214.15 radiation 1.0 30 > th dose dependent sin 14 NA
570 214.16 radiation 1.0 10 < th dose dependent rect. 15 17
594 214.21 humidity 80.0 10 < th dose independent rect. 12 6
598 214.23 humidity 50.0 1440 > th dose dependent sin 23 NA
600 214.23 humidity 50.0 1440 > th dose dependent rect. 4 16
612 214.27 radiation 1.0 30 < th dose independent sin 22 NA
641 214.37 humidity 90.0 720 < th dose dependent rect. 19 2
658 214.42 humidity 90.0 1440 < th dose dependent rect. 8 8
673 214.47 humidity 90.0 1440 < th dose dependent rect. 5 11
686 214.52 humidity 90.0 1440 < th dose dependent rect. 11 8
715 214.63 humidity 80.0 720 > th dose independent rect. 7 20
718 214.64 precipitation 0.1 720 < th dose independent rect. 3 19
721 214.64 precipitation 0.1 720 < th dose dependent rect. 3 19
723 214.65 humidity 50.0 1440 > th dose dependent rect. 8 8
770 214.79 humidity 80.0 1440 < th dose dependent rect. 11 23
793 214.90 humidity 70.0 1440 > th dose dependent rect. 8 7
796 214.91 humidity 90.0 1440 < th dose dependent rect. 11 5
799 214.92 humidity 70.0 1440 > th dose dependent rect. 18 1
802 214.93 radiation 1.0 30 < th dose independent rect. 15 13
810 214.97 humidity 50.0 720 > th dose dependent rect. 15 12
819 215.00 radiation 10.0 30 > th dose independent rect. 12 6
832 215.00 temperature 30.0 10 < th dose dependent rect. 7 13
847 215.04 humidity 80.0 1440 < th dose dependent rect. 17 23
866 215.09 humidity 90.0 720 < th dose independent rect. 20 2
877 215.11 radiation 30.0 90 < th dose dependent rect. 15 13
895 215.17 precipitation 0.1 720 < th dose independent rect. 12 10
899 215.17 precipitation 0.1 720 < th dose dependent rect. 12 10
901 215.18 precipitation 0.1 720 < th dose independent rect. 10 14
905 215.18 precipitation 0.1 720 < th dose dependent rect. 10 14
918 215.24 humidity 70.0 1440 > th dose independent rect. 15 4
934 215.28 radiation 1.0 10 < th dose dependent rect. 7 13
937 215.28 humidity 80.0 1440 < th dose dependent rect. 15 23
971 215.36 humidity 50.0 720 > th dose dependent rect. 17 2
977 215.37 radiation 1.0 30 > th dose independent sin 22 NA