BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0151200 Os11g0151200|AK106826
         (257 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0151200  Conserved hypothetical protein                      233   1e-61

>Os11g0151200 Conserved hypothetical protein
          Length = 257

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/257 (55%), Positives = 142/257 (55%)

Query: 1   MSEARHXXXXXXXXXXXXXXXXPQRGHGRPDVELVDVVGAVRLTDDAVHVAGERVELERQ 60
           MSEARH                PQRGHGRPDVELVDVVGAVRLTDDAVHVAGERVELERQ
Sbjct: 1   MSEARHGAVGGEQAGGGEAVVAPQRGHGRPDVELVDVVGAVRLTDDAVHVAGERVELERQ 60

Query: 61  XXXXXXXXXXXXXXXHPRVLGGDGHGVGPQLEPPVERHEHAXXXXXXXXXXXXXXXXXXX 120
                          HPRVLGGDGHGVGPQLEPPVERHEHA                   
Sbjct: 61  VEVGEAVVAGDAVPVHPRVLGGDGHGVGPQLEPPVERHEHAVRRLGARHGQRRHGGGGPG 120

Query: 121 XXXXXXEEHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLDPGEVARHAVG 180
                 EEHR                                    NGLDPGEVARHAVG
Sbjct: 121 GAGVLREEHRLAVDDDLEAVDVVVPGGGLPGADVEAVGAAVVEEDGNGLDPGEVARHAVG 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXPPAMEVEGVAVAADEPRVAARPRHVAHCTTTESIRQR 240
                                  PPAMEVEGVAVAADEPRVAARPRHVAHCTTTESIRQR
Sbjct: 181 AALADEVRVDVEVAVGDDAEVGVPPAMEVEGVAVAADEPRVAARPRHVAHCTTTESIRQR 240

Query: 241 QDGGATTGGEMLRTSSW 257
           QDGGATTGGEMLRTSSW
Sbjct: 241 QDGGATTGGEMLRTSSW 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,967,540
Number of extensions: 183298
Number of successful extensions: 352
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)