BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0148400 Os11g0148400|AK066122
         (612 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0148400  Conserved hypothetical protein                     1016   0.0  
Os12g0145632  Hypothetical protein                                254   1e-67

>Os11g0148400 Conserved hypothetical protein
          Length = 612

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/563 (90%), Positives = 512/563 (90%)

Query: 50  VDSRLGSWEKPRGPLPLSLFXXXXXXXXXXXXXXLPPTAADQRGASHASSNGSKPADLKD 109
           VDSRLGSWEKPRGPLPLSLF              LPPTAADQRGASHASSNGSKPADLKD
Sbjct: 50  VDSRLGSWEKPRGPLPLSLFGADEDEEEEEGPAELPPTAADQRGASHASSNGSKPADLKD 109

Query: 110 LIAGLYGSHPQPSSTDAAEVGTQXXXXXXXXXXXXXXXXXXXXXXXXFKAAAPSSSSDAV 169
           LIAGLYGSHPQPSSTDAAEVGTQ                        FKAAAPSSSSDAV
Sbjct: 110 LIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEEEEEDGDGFEDDGWEFKAAAPSSSSDAV 169

Query: 170 QDGGRQAHGDLTQDVPKSMSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSY 229
           QDGGRQAHGDLTQDVPKSMSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSY
Sbjct: 170 QDGGRQAHGDLTQDVPKSMSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSY 229

Query: 230 FPPNNAAILDLYKESEPIDAVHIMQCXXXXXXXXXXXXXNTEMNSSFGTDENHSIKSASD 289
           FPPNNAAILDLYKESEPIDAVHIMQC             NTEMNSSFGTDENHSIKSASD
Sbjct: 230 FPPNNAAILDLYKESEPIDAVHIMQCSSESVQSSSDMFSNTEMNSSFGTDENHSIKSASD 289

Query: 290 RILIDFYHKLREESLTVISQYKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSS 349
           RILIDFYHKLREESLTVISQYKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSS
Sbjct: 290 RILIDFYHKLREESLTVISQYKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSS 349

Query: 350 LAKGFCKDEHPSKDVCISELLNSAKEDHLKDFDKEYHLTEIIAMALEDMSSAVKLYKHSV 409
           LAKGFCKDEHPSKDVCISELLNSAKEDHLKDFDKEYHLTEIIAMALEDMSSAVKLYKHSV
Sbjct: 350 LAKGFCKDEHPSKDVCISELLNSAKEDHLKDFDKEYHLTEIIAMALEDMSSAVKLYKHSV 409

Query: 410 SILRTLEIASKEEQCDYVSAWYSMLLSCAQELQHGAMIWQESCHANVGETVISQGAHYFI 469
           SILRTLEIASKEEQCDYVSAWYSMLLSCAQELQHGAMIWQESCHANVGETVISQGAHYFI
Sbjct: 410 SILRTLEIASKEEQCDYVSAWYSMLLSCAQELQHGAMIWQESCHANVGETVISQGAHYFI 469

Query: 470 ALGEIYRVAQILHISMLSFKPWVLADPGMLSKMLVCWNSCVNSWTSGLGMALTMVVDSKN 529
           ALGEIYRVAQILHISMLSFKPWVLADPGMLSKMLVCWNSCVNSWTSGLGMALTMVVDSKN
Sbjct: 470 ALGEIYRVAQILHISMLSFKPWVLADPGMLSKMLVCWNSCVNSWTSGLGMALTMVVDSKN 529

Query: 530 LHAPVAKVLLESIININDIEVPNLQSFLPSDKMACKLTLLPTSLVPGMEVIIWDADHYFV 589
           LHAPVAKVLLESIININDIEVPNLQSFLPSDKMACKLTLLPTSLVPGMEVIIWDADHYFV
Sbjct: 530 LHAPVAKVLLESIININDIEVPNLQSFLPSDKMACKLTLLPTSLVPGMEVIIWDADHYFV 589

Query: 590 KVANLWANQISSDPPQFSVSRVA 612
           KVANLWANQISSDPPQFSVSRVA
Sbjct: 590 KVANLWANQISSDPPQFSVSRVA 612



>Os12g0145632 Hypothetical protein
          Length = 298

 Score =  254 bits (649), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 146/311 (46%), Positives = 176/311 (56%), Gaps = 88/311 (28%)

Query: 188 MSSDQEGWSLFTSVSENLNNVQTTDHVGTRESAGQSVKAFSYFPPNNAAILDLYKESEPI 247
           +   +E WSLFTSV ENLN+V+TT+H+ T +S G          PN+AAILDLYKE+E +
Sbjct: 64  LRRRREDWSLFTSVDENLNHVRTTNHIETCKSTG----------PNDAAILDLYKETELV 113

Query: 248 DAVHIMQCXXXXXXXXXXXXXNTEMNSSFGTDENHSIKSASDRILIDFYHKLREESLTVI 307
           DAVH+ Q              N EMNSSF TDENHSIKS+SDR LIDFYHKLREE+LTVI
Sbjct: 114 DAVHMTQSSSESVQSPSDMFSNNEMNSSFETDENHSIKSSSDRTLIDFYHKLREETLTVI 173

Query: 308 SQYKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSSLAKGFCKDEHPSKDVCIS 367
            +  KD K                        EIC++L +     GFC +EH +KDV IS
Sbjct: 174 FRNGKDFK------------------------EICEKLPE-----GFCIEEHTAKDVFIS 204

Query: 368 ELLNSAKEDHLKDFDKEYHLTEIIAMALEDMSSAVKLYKHSVSILRTLEIASKEEQCDYV 427
           ELL+SA+E HLKDF++EYHL E I M                                  
Sbjct: 205 ELLDSAREVHLKDFEEEYHLIEKIPM---------------------------------- 230

Query: 428 SAWYSMLLSCAQELQHGAMIWQESCHANVGETVISQGAHYFIALGEIYRVAQILHISMLS 487
                          HG ++WQESC +NV   VISQG  +FIALGEIYRVAQIL++S+ S
Sbjct: 231 ---------------HGVVLWQESCQSNVCSVVISQGGQFFIALGEIYRVAQILNLSLQS 275

Query: 488 FKPWVLADPGM 498
           FKPWVLADPGM
Sbjct: 276 FKPWVLADPGM 286



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,207,870
Number of extensions: 634426
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 3
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)