Os11g0148400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0148400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.43 | 0.368 | 7.74 | 0.0109 | 1.86 | -3.46 | -0.085 | 0.383 | 0.13 | 19.7 | 1.231 | 785 | -- | -- |
| 61.13 | 0.364 | 7.73 | -0.00175 | 1.8 | -3.36 | 0.191 | -- | 0.133 | 19.9 | 1.231 | 798 | -- | -- |
| 60.7 | 0.363 | 7.73 | 0.0485 | 1.8 | -3.34 | -- | 0.364 | 0.145 | 20.1 | 1.238 | 813 | -- | -- |
| 60.61 | 0.363 | 7.73 | 0.0225 | 1.86 | -3.37 | -- | -- | 0.144 | 20.3 | 1.24 | 829 | -- | -- |
| 71.17 | 0.393 | 7.7 | 0.0286 | -- | -1.91 | -- | -0.262 | 0.162 | -- | 0.75 | 1855 | -- | -- |
| 84.91 | 0.432 | 7.71 | -0.218 | 1.09 | -- | -0.245 | -- | 0.0074 | 3.42 | -- | -- | -- | -- |
| 85.1 | 0.432 | 7.71 | -0.213 | 1.09 | -- | -- | -- | 0.00883 | 3.43 | -- | -- | -- | -- |
| 70.22 | 0.39 | 7.69 | -0.0363 | -- | -1.93 | -- | -- | 0.164 | -- | 1.44 | 1833 | -- | -- |
| 60.59 | 0.363 | 7.74 | -- | 1.92 | -3.46 | -- | -- | 0.144 | 20.2 | 1.233 | 829 | -- | -- |
| 151.95 | 0.576 | 7.71 | -0.167 | -- | -- | -- | -- | 0.0377 | -- | -- | -- | -- | -- |
| 86.3 | 0.435 | 7.7 | -- | 1.09 | -- | -- | -- | 0.0326 | 3.43 | -- | -- | -- | -- |
| 70.13 | 0.39 | 7.68 | -- | -- | -1.9 | -- | -- | 0.174 | -- | 1.35 | 1836 | -- | -- |
| 152.69 | 0.577 | 7.7 | -- | -- | -- | -- | -- | 0.0563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 3 | 60.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 8 | 61.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 19 | 61.63 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 19 |
| 26 | 61.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 29 | 61.89 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 55 | 62.53 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 67 | 62.66 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 72 | 62.75 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 9 |
| 74 | 62.78 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 77 | 62.84 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 80 | 62.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 81 | 62.87 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 88 | 62.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 103 | 62.98 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 120 | 63.04 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 137 | 63.05 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 141 | 63.06 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 167 | 63.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 171 | 63.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 186 | 63.25 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 189 | 63.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 190 | 63.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 214 | 63.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 224 | 63.43 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 237 | 63.46 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 247 | 63.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 251 | 63.53 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 257 | 63.55 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 268 | 63.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 271 | 63.60 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 13 |
| 308 | 63.72 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 354 | 63.88 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 378 | 64.00 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 382 | 64.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 396 | 64.11 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 19 |
| 406 | 64.17 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 411 | 64.20 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 424 | 64.30 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 455 | 64.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 458 | 64.37 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 482 | 64.45 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 19 |
| 483 | 64.45 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 21 |
| 510 | 64.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 542 | 64.66 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 555 | 64.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 594 | 64.76 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 655 | 64.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 697 | 64.91 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 19 |
| 769 | 64.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 810 | 65.00 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 16 |
| 865 | 65.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 899 | 65.16 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 905 | 65.18 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 912 | 65.20 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 931 | 65.21 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 991 | 65.25 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |