BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0148300 Os11g0148300|J075067L02
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0148300  Conserved hypothetical protein                      180   2e-46
Os12g0145500  Peptidylprolyl isomerase, FKBP-type domain con...   115   5e-27

>Os11g0148300 Conserved hypothetical protein
          Length = 92

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 7  LQAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCSIVSFFCLH 66
          LQAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCSIVSFFCLH
Sbjct: 7  LQAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCSIVSFFCLH 66

Query: 67 KVQSIKTHAVTLTPVGLCIASDELGF 92
          KVQSIKTHAVTLTPVGLCIASDELGF
Sbjct: 67 KVQSIKTHAVTLTPVGLCIASDELGF 92



>Os12g0145500 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 370

 Score =  115 bits (289), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/52 (98%), Positives = 52/52 (100%)

Query: 9   AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCSIV 60
           AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQC+IV
Sbjct: 212 AIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIV 263



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,582,250
Number of extensions: 77534
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 2
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 149 (62.0 bits)