BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0146300 Os11g0146300|AK062801
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0146300  Conserved hypothetical protein                      367   e-102
Os11g0151900                                                       89   2e-18

>Os11g0146300 Conserved hypothetical protein
          Length = 204

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/204 (93%), Positives = 190/204 (93%)

Query: 1   MAASRYYLNLDFDVSDMKPLPDYCFSEAWEVWEAHADQSDYEREQAVLRFYXXXXXXXXX 60
           MAASRYYLNLDFDVSDMKPLPDYCFSEAWEVWEAHADQSDYEREQAVLRFY         
Sbjct: 1   MAASRYYLNLDFDVSDMKPLPDYCFSEAWEVWEAHADQSDYEREQAVLRFYEEKEKEIKA 60

Query: 61  XXXXXLSDEDDEEKDGEICQLLGYEEEHGQVSAGMEDIPENHVKKGCTYASPEYLAELTQ 120
                LSDEDDEEKDGEICQLLGYEEEHGQVSAGMEDIPENHVKKGCTYASPEYLAELTQ
Sbjct: 61  AYSEALSDEDDEEKDGEICQLLGYEEEHGQVSAGMEDIPENHVKKGCTYASPEYLAELTQ 120

Query: 121 KILLEINVNEDLGNLSLLESWKVMRTRKLLKQVLCHEMKHARNEGGQVFEGELEHKKARM 180
           KILLEINVNEDLGNLSLLESWKVMRTRKLLKQVLCHEMKHARNEGGQVFEGELEHKKARM
Sbjct: 121 KILLEINVNEDLGNLSLLESWKVMRTRKLLKQVLCHEMKHARNEGGQVFEGELEHKKARM 180

Query: 181 AESSQNKGEDEETLLPVGLTPDDI 204
           AESSQNKGEDEETLLPVGLTPDDI
Sbjct: 181 AESSQNKGEDEETLLPVGLTPDDI 204



>Os11g0151900 
          Length = 185

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 84/165 (50%), Gaps = 47/165 (28%)

Query: 2   AASRYYLNLDFDVSDMKPLPDYCFSEAWEVWEAHADQSDYER--EQAVLRFYXXXXXXXX 59
           AA+R YLNLDFDVSD KPLPDYCFSEA EVW AH+D+SD ER  EQAVLRFY        
Sbjct: 3   AAARNYLNLDFDVSDTKPLPDYCFSEASEVWRAHSDRSDEEREQEQAVLRFY-------- 54

Query: 60  XXXXXXLSDEDDEEKDGEICQLLGYEEEHGQ------------------VSAGMEDIPEN 101
                       EEK+ E+  +    E  G                   ++ G+   P N
Sbjct: 55  ------------EEKEKELEAIDDCSEALGDVDCDDEEEEEDEGTCELCMNEGLAPSPRN 102

Query: 102 HVKKGCTYASPEYLAELTQKILLEINVNEDLGN--LSLLESWKVM 144
           H +  C    P YL  + Q+IL EI  ++DL N   ++ E + VM
Sbjct: 103 HGEHLC----PVYLEMVNQQILEEIK-DQDLHNEDNNIFERFGVM 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,086,412
Number of extensions: 272073
Number of successful extensions: 537
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)