BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0135300 Os11g0135300|J080307M17
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0135300  Similar to 60S acidic ribosomal protein P0          211   1e-55
Os08g0130500  60S acidic ribosomal protein P0                     177   2e-45
Os12g0133050  Similar to 60S acidic ribosomal protein P0          174   9e-45

>Os11g0135300 Similar to 60S acidic ribosomal protein P0
          Length = 119

 Score =  211 bits (536), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/119 (89%), Positives = 106/119 (89%)

Query: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
           MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61  LIRRCIKVHADNTGNKDFLELMPLLVVXXXXXXXXXXXXXCTCLDSTPRFFLTCFSCCL 119
           LIRRCIKVHADNTGNKDFLELMPLLVV             CTCLDSTPRFFLTCFSCCL
Sbjct: 61  LIRRCIKVHADNTGNKDFLELMPLLVVSSPSSSFFFFSFPCTCLDSTPRFFLTCFSCCL 119



>Os08g0130500 60S acidic ribosomal protein P0
          Length = 319

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/86 (98%), Positives = 86/86 (100%)

Query: 1  MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
          MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT
Sbjct: 1  MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61 LIRRCIKVHADNTGNKDFLELMPLLV 86
          LIRRCIKVHADNTGNK+FLELMPLLV
Sbjct: 61 LIRRCIKVHADNTGNKEFLELMPLLV 86



>Os12g0133050 Similar to 60S acidic ribosomal protein P0
          Length = 110

 Score =  174 bits (442), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
          MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT
Sbjct: 1  MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61 LIRRCIKVHADNTGNKDFLELMPLLV 86
          LIRRCIKVHADNTGNKDFLELMPLLV
Sbjct: 61 LIRRCIKVHADNTGNKDFLELMPLLV 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,237,687
Number of extensions: 99924
Number of successful extensions: 235
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)