Os11g0135300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S acidic ribosomal protein P0.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0135300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 60S acidic ribosomal protein P0.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 275.08 | 0.779 | 4.25 | -0.843 | 0.531 | -0.886 | -0.577 | -1.47 | -0.0815 | 3.9 | 25.5 | 9485 | -- | -- |
| 276.05 | 0.774 | 4.17 | -0.355 | 0.47 | -0.937 | -0.664 | -- | 0.124 | 3.92 | 26.2 | 9196 | -- | -- |
| 276.03 | 0.774 | 4.25 | -0.846 | 0.53 | -0.886 | -- | -1.51 | -0.0816 | 4.04 | 25.5 | 9493 | -- | -- |
| 276.92 | 0.775 | 4.17 | -0.342 | 0.518 | -0.958 | -- | -- | 0.137 | 3.98 | 26.28 | 9547 | -- | -- |
| 290.15 | 0.793 | 4.25 | -0.835 | -- | -0.831 | -- | -1.41 | -0.085 | -- | 25.5 | 9121 | -- | -- |
| 308.04 | 0.823 | 4.25 | -0.824 | 0.484 | -- | -0.654 | -- | -0.264 | 4.29 | -- | -- | -- | -- |
| 309.13 | 0.823 | 4.25 | -0.818 | 0.485 | -- | -- | -- | -0.261 | 4.59 | -- | -- | -- | -- |
| 289.9 | 0.793 | 4.17 | -0.365 | -- | -0.931 | -- | -- | 0.134 | -- | 26.2 | 9169 | -- | -- |
| 278.75 | 0.778 | 4.12 | -- | 0.492 | -1.09 | -- | -- | 0.307 | 3.92 | 26 | 13793 | -- | -- |
| 321.65 | 0.838 | 4.26 | -0.799 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 326.75 | 0.846 | 4.23 | -- | 0.47 | -- | -- | -- | -0.17 | 4.63 | -- | -- | -- | -- |
| 291.36 | 0.795 | 4.13 | -- | -- | -1.04 | -- | -- | 0.307 | -- | 25.9 | 13478 | -- | -- |
| 338.48 | 0.859 | 4.24 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.51 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 17 | 271.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 24 | 272.14 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 30 | 272.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 31 | 272.29 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 45 | 272.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 58 | 273.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 69 | 273.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 81 | 273.42 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 84 | 273.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 94 | 273.58 | humidity | 60 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 110 | 273.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 119 | 273.88 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 126 | 273.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 143 | 274.12 | temperature | 25 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 146 | 274.13 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 157 | 274.23 | temperature | 25 | 14400 | < th | dose dependent | sin | 1 | NA |
| 195 | 274.41 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 216 | 274.48 | temperature | 25 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 220 | 274.51 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 235 | 274.57 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 248 | 274.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 283 | 274.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 315 | 274.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 328 | 274.82 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 361 | 274.89 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 371 | 274.92 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 390 | 274.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 392 | 274.97 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 401 | 274.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 405 | 275.00 | temperature | 25 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 417 | 275.02 | temperature | 25 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 419 | 275.03 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 475 | 275.13 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 509 | 275.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 515 | 275.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 521 | 275.20 | humidity | 50 | 14400 | > th | dose dependent | sin | 14 | NA |
| 539 | 275.25 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 548 | 275.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 577 | 275.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 593 | 275.33 | temperature | 20 | 14400 | > th | dose independent | sin | 14 | NA |
| 611 | 275.35 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 633 | 275.38 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 679 | 275.45 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 721 | 275.50 | humidity | 90 | 14400 | < th | dose dependent | sin | 15 | NA |
| 803 | 275.62 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 857 | 275.67 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 918 | 275.76 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 971 | 275.83 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |