BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0133600 Os11g0133600|AK058340
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0133600  Similar to Heterogeneous nuclear ribonucleopro...   545   e-155
Os12g0131000  Similar to Heterogeneous nuclear ribonucleopro...   509   e-144

>Os11g0133600 Similar to Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)
           (hnRNP 2H9). Splice isoform 6
          Length = 298

 Score =  545 bits (1405), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/278 (95%), Positives = 265/278 (95%)

Query: 21  SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFXXXXXXXXXXXXXFYQPYGANLP 80
           SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYF             FYQPYGANLP
Sbjct: 21  SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGANLP 80

Query: 81  GAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA 140
           GAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA
Sbjct: 81  GAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA 140

Query: 141 MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHSPPPRPKKPAE 200
           MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHSPPPRPKKPAE
Sbjct: 141 MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHSPPPRPKKPAE 200

Query: 201 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA 260
           DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA
Sbjct: 201 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA 260

Query: 261 EVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ 298
           EVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ
Sbjct: 261 EVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ 298



>Os12g0131000 Similar to Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)
           (hnRNP 2H9). Splice isoform 6
          Length = 292

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/279 (92%), Positives = 260/279 (93%), Gaps = 1/279 (0%)

Query: 21  SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFXXXXXXXXXXXXXFYQPYGANLP 80
           SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYF             FYQPYG NLP
Sbjct: 14  SKRPRMIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGTNLP 73

Query: 81  GAGANSAIQNFPGVRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA 140
           GAGANSAIQNFPGVRLRGLPFDCDDLDI KFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA
Sbjct: 74  GAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSA 133

Query: 141 MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHS-PPPRPKKPA 199
           MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHS PPPRPKKPA
Sbjct: 134 MQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVNQGGFFDSEYRHSPPPPRPKKPA 193

Query: 200 EDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPT 259
           EDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELT+ENVHI YRPDGKATGEA+VEFPT
Sbjct: 194 EDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPT 253

Query: 260 AEVAKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRARQ 298
           AEV KTAMCKDKMTIGTRYVELFPSTPEEASRAKSR RQ
Sbjct: 254 AEVVKTAMCKDKMTIGTRYVELFPSTPEEASRAKSRVRQ 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,815,599
Number of extensions: 411021
Number of successful extensions: 1275
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1266
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)