Os11g0133600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9). Splice isoform 6.
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Os11g0133600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9). Splice isoform 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.75 | 0.192 | 12.9 | 1.29 | 0.39 | -0.808 | -0.026 | 1.38 | 0.368 | 16.2 | 10.17 | 406 | -- | -- |
| 17.86 | 0.197 | 12.9 | 1.07 | 0.35 | -0.765 | 0.211 | -- | 0.308 | 16.7 | 9.104 | 540 | -- | -- |
| 16.75 | 0.191 | 12.9 | 1.29 | 0.39 | -0.808 | -- | 1.36 | 0.367 | 16.2 | 10.17 | 407 | -- | -- |
| 17.96 | 0.197 | 12.9 | 1.07 | 0.338 | -0.752 | -- | -- | 0.307 | 16.8 | 7.488 | 573 | -- | -- |
| 18.23 | 0.199 | 12.8 | 1.34 | -- | -0.714 | -- | 1.16 | 0.379 | -- | 8.408 | 1133 | -- | -- |
| 24.62 | 0.233 | 12.9 | 0.894 | 0.217 | -- | 0.127 | -- | 0.194 | 14.5 | -- | -- | -- | -- |
| 24.68 | 0.233 | 12.9 | 0.897 | 0.218 | -- | -- | -- | 0.195 | 14.6 | -- | -- | -- | -- |
| 20.66 | 0.212 | 12.9 | 1.11 | -- | -0.576 | -- | -- | 0.308 | -- | 5.444 | 2504 | -- | -- |
| 44.97 | 0.312 | 12.9 | -- | 0.254 | -0.267 | -- | -- | 0.128 | 15.4 | -13.98 | 411 | -- | -- |
| 27.47 | 0.245 | 12.9 | 0.888 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 45.89 | 0.317 | 12.9 | -- | 0.201 | -- | -- | -- | 0.0947 | 14.5 | -- | -- | -- | -- |
| 46.38 | 0.317 | 12.9 | -- | -- | -0.231 | -- | -- | 0.126 | -- | 22.8 | 1098 | -- | -- |
| 48.26 | 0.324 | 12.9 | -- | -- | -- | -- | -- | 0.0907 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 5 | 16.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 58 | 16.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 126 | 16.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 127 | 16.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 153 | 16.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 173 | 16.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 183 | 16.72 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 191 | 16.73 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 209 | 16.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 215 | 16.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 268 | 16.80 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 290 | 16.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 299 | 16.83 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 331 | 16.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 346 | 16.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 414 | 16.90 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 525 | 16.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 610 | 16.99 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 747 | 17.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 872 | 17.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 951 | 17.12 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |