BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0131200 Os11g0131200|J065024D18
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0131200  Mpv17/PMP22 family protein                          232   8e-62
Os12g0127900                                                      125   1e-29

>Os11g0131200 Mpv17/PMP22 family protein
          Length = 175

 Score =  232 bits (592), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 127/175 (72%)

Query: 1   MAMASTLPLLLVHRSXXXXXXXXXXXLLHSRRLTLPSRLASLPATIAVVHPRKGVRLSKL 60
           MAMASTLPLLLVHRS           LLHSRRLTLPSRLASLPATIAVVHPRKGVRLSKL
Sbjct: 1   MAMASTLPLLLVHRSTPPTPRPTAPPLLHSRRLTLPSRLASLPATIAVVHPRKGVRLSKL 60

Query: 61  HXXXXXXXXXXXXXXXXXXXXXXXXXXXMDWRXXXXXXXXXXDKHPITTKAVTSAVLTLT 120
           H                           MDWR          DKHPITTKAVTSAVLTLT
Sbjct: 61  HAASCCDSASAAGVTTGGGAGGGGAKGAMDWRLLLAWYLLALDKHPITTKAVTSAVLTLT 120

Query: 121 GDLICQVTCSCFLLPAFSHPSIATLVDYLVLLNWLTNNEPVVSLSSCRGLPVTLQ 175
           GDLICQVTCSCFLLPAFSHPSIATLVDYLVLLNWLTNNEPVVSLSSCRGLPVTLQ
Sbjct: 121 GDLICQVTCSCFLLPAFSHPSIATLVDYLVLLNWLTNNEPVVSLSSCRGLPVTLQ 175



>Os12g0127900 
          Length = 259

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 75/127 (59%)

Query: 1   MAMASTLPLLLVHRSXXXXXXXXXXXLLHSRRLTLPSRLASLPATIAVVHPRKGVRLSKL 60
           MAMASTLPLLLVHRS           LLHSRRL LP R ASLPAT AVVHPRKGVRLSKL
Sbjct: 1   MAMASTLPLLLVHRSTPPTPRPTAPPLLHSRRLALPPRPASLPATTAVVHPRKGVRLSKL 60

Query: 61  HXXXXXXXXXXXXXXXXXXXXXXXXXXXMDWRXXXXXXXXXXDKHPITTKAVTSAVLTLT 120
           H                           MDWR          DKHPITTKAVTSAVLTLT
Sbjct: 61  HAASCCDSASAAGVAAGGGGGGGGAKGEMDWRLLLAWYLLALDKHPITTKAVTSAVLTLT 120

Query: 121 GDLICQV 127
           GDLICQ+
Sbjct: 121 GDLICQL 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,960,168
Number of extensions: 109763
Number of successful extensions: 393
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)