Os11g0131200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mpv17/PMP22 family protein.
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Os11g0131200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mpv17/PMP22 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.74 | 0.679 | 3.17 | -0.719 | 0.429 | -0.609 | -0.821 | 3.01 | -0.126 | 6.66 | 3.801 | 71 | -- | -- |
| 221.5 | 0.693 | 3.23 | -0.771 | 0.352 | -0.52 | -0.204 | -- | -0.173 | 7 | 6.283 | 63 | -- | -- |
| 210.11 | 0.675 | 3.17 | -0.745 | 0.402 | -0.56 | -- | 2.62 | -0.126 | 7.02 | 3.76 | 69 | -- | -- |
| 220.76 | 0.692 | 3.22 | -0.753 | 0.331 | -0.609 | -- | -- | -0.149 | 7.39 | 17.13 | 61 | -- | -- |
| 215.88 | 0.684 | 3.18 | -0.817 | -- | -0.274 | -- | 2.43 | -0.115 | -- | 3.94 | 68 | -- | -- |
| 223.49 | 0.701 | 3.23 | -0.869 | 0.232 | -- | -0.541 | -- | -0.147 | 11.5 | -- | -- | -- | -- |
| 224.62 | 0.702 | 3.23 | -0.893 | 0.241 | -- | -- | -- | -0.151 | 10.7 | -- | -- | -- | -- |
| 225.16 | 0.699 | 3.23 | -0.8 | -- | -0.401 | -- | -- | -0.14 | -- | 19.81 | 25 | -- | -- |
| 234.2 | 0.713 | 3.2 | -- | 0.431 | -0.957 | -- | -- | -0.0673 | 6.64 | 15.49 | 64 | -- | -- |
| 228.21 | 0.706 | 3.23 | -0.898 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 245.64 | 0.733 | 3.2 | -- | 0.248 | -- | -- | -- | -0.0513 | 11 | -- | -- | -- | -- |
| 240.72 | 0.723 | 3.21 | -- | -- | -0.649 | -- | -- | -0.0522 | -- | 22.13 | 24 | -- | -- |
| 249.47 | 0.737 | 3.21 | -- | -- | -- | -- | -- | -0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.14 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 2 | 199.81 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 5 | 201.15 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 7 | 201.48 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 12 | 202.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 14 | 203.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 16 | 203.32 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 31 | 203.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 32 | 203.46 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 36 | 203.80 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 43 | 203.83 | radiation | 30 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 51 | 203.86 | radiation | 30 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 71 | 203.97 | humidity | 70 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 79 | 204.02 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 100 | 204.12 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 15 |
| 109 | 204.22 | temperature | 20 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 122 | 204.32 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 128 | 204.35 | temperature | 20 | 14400 | < th | dose dependent | sin | 16 | NA |
| 137 | 204.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 158 | 204.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 173 | 204.55 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 239 | 204.78 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 247 | 204.81 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 248 | 204.81 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 251 | 204.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 252 | 204.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 253 | 204.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 285 | 204.86 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 320 | 204.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 362 | 204.99 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 382 | 205.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 429 | 205.11 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 477 | 205.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 479 | 205.28 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 536 | 205.49 | temperature | 20 | 14400 | < th | dose dependent | sin | 2 | NA |
| 542 | 205.54 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 2 |
| 547 | 205.55 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 558 | 205.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 564 | 205.61 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 571 | 205.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 578 | 205.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 613 | 205.71 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 622 | 205.74 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 634 | 205.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 644 | 205.79 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 694 | 205.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 699 | 205.90 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 702 | 205.90 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 729 | 205.99 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 738 | 206.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 739 | 206.02 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 743 | 206.03 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 778 | 206.09 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 812 | 206.13 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 823 | 206.17 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 849 | 206.19 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 872 | 206.24 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 874 | 206.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 876 | 206.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 884 | 206.27 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 896 | 206.30 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 909 | 206.32 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 929 | 206.35 | radiation | 20 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 935 | 206.37 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 970 | 206.47 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 975 | 206.50 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 979 | 206.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 985 | 206.53 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 994 | 206.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 995 | 206.60 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 4 |