BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0130200 Os11g0130200|AK059458
         (275 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0130200  Protein of unknown function DUF309 family protein   381   e-106
Os12g0126900                                                      362   e-100
Os09g0421400                                                      202   3e-52

>Os11g0130200 Protein of unknown function DUF309 family protein
          Length = 275

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/210 (89%), Positives = 187/210 (89%)

Query: 66  TARGDYDFYENYAXXXXXXXXXXXVIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT 125
           TARGDYDFYENYA           VIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT
Sbjct: 66  TARGDYDFYENYADEEGDEEEESEVIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT 125

Query: 126 RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLCXXXXXXXXXXXXSPFSRFQEEVAAAL 185
           RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLC            SPFSRFQEEVAAAL
Sbjct: 126 RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLCKLRKLRLDDDTTSPFSRFQEEVAAAL 185

Query: 186 NFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETTTSADGDGVPTIIFS 245
           NFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETTTSADGDGVPTIIFS
Sbjct: 186 NFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETTTSADGDGVPTIIFS 245

Query: 246 ASSRLVRVKLPTLSATEHHLAALQCTSEYI 275
           ASSRLVRVKLPTLSATEHHLAALQCTSEYI
Sbjct: 246 ASSRLVRVKLPTLSATEHHLAALQCTSEYI 275



>Os12g0126900 
          Length = 280

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/214 (85%), Positives = 184/214 (85%), Gaps = 4/214 (1%)

Query: 66  TARGDYDFYENYAXXXXXXXXXXXVIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT 125
           TARGDYDFYENYA           VIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT
Sbjct: 67  TARGDYDFYENYADEEGDEEEESEVIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPT 126

Query: 126 RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLC--XXXXXXXXXXXXSPFSRFQEEVAA 183
           RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLC              SPFSRF+EEVAA
Sbjct: 127 RTLLHAILQCAVAFHHLFNQNHRGAMMELGEGLCKLRKLRLDDDDDTTSPFSRFEEEVAA 186

Query: 184 ALNFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETTTSA--DGDGVPT 241
           ALNFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLET T A  DGDGVPT
Sbjct: 187 ALNFIYRTQKELAACTDDLCLTMDGSATSYQLLGNFAAGQKLYRLETATGADGDGDGVPT 246

Query: 242 IIFSASSRLVRVKLPTLSATEHHLAALQCTSEYI 275
           IIFSASSRLVRVKLPTLSATE HLAALQCTSEYI
Sbjct: 247 IIFSASSRLVRVKLPTLSATEQHLAALQCTSEYI 280



>Os09g0421400 
          Length = 182

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/134 (76%), Positives = 108/134 (80%), Gaps = 3/134 (2%)

Query: 90  VIGGSFDAAVALFNGGEFHACHDVVEELWYTAEEPTRTLLHA--ILQCAVAFHHLFNQNH 147
           +I GSFD AVALFNGGEFHA HDVVEELWYT +EPTRTL  A  ILQCAV FHHLFNQNH
Sbjct: 49  IICGSFDLAVALFNGGEFHARHDVVEELWYTTDEPTRTLPAAPRILQCAVGFHHLFNQNH 108

Query: 148 RGAMMELGEGLCXXXXXXXXXXXXSPFSRFQEEVAAALNFIYRTQKELAACTDDLCLTMD 207
           RGAMMELGE LC            SPFSRF++EV AALNF YRTQKELAACTDDL LTMD
Sbjct: 109 RGAMMELGESLCKLRKLRLDDTT-SPFSRFEKEVTAALNFTYRTQKELAACTDDLYLTMD 167

Query: 208 GSATSYQLLGNFAA 221
           GS TS+QLLGNFAA
Sbjct: 168 GSVTSHQLLGNFAA 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,769,455
Number of extensions: 239550
Number of successful extensions: 387
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 3
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)