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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0130200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF309 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.86 (0.0445) R2 : 0.928
β1 : -1.19 (0.164) R2dD : 0.0094 R2D : 0.022
β2 : 9.41 (0.134) R2dC : 1.27 R2C : 0.715
β3 : 6.4 (0.249) R2dE : 0.183 R2E : -0.362
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.327 (0.0995) R2dN8 : 0.00263 R2N8 : 0.0111
σ : 0.817
deviance : 308
__
_____
C
peak time of C : 13.6
E
wheather : temperature
threshold : 28.61
memory length : 323
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.77 0.819 7.82 -0.793 9.78 6.32 -1.23 -3.4 -0.307 13.6 29.82 274 14.8 17.9
308.18 0.818 7.87 -1.25 9.47 6.43 0.362 -- -0.361 13.6 29.02 327 14.9 17.2
304.99 0.813 7.82 -0.907 9.58 6.21 -- -2.15 -0.304 13.6 29.15 276 14.9 17.7
308 0.817 7.86 -1.19 9.41 6.4 -- -- -0.327 13.6 28.61 323 15 17
2382.46 2.29 8.19 -2.64 -- -5.99 -- -2.25 -1.52 -- 42.95 993 17.5 18.2
659.33 1.2 8.05 -2.25 7.32 -- 1.32 -- -1.24 13 -- -- -- --
666.65 1.21 8.04 -2.2 7.31 -- -- -- -1.23 13 -- -- -- --
1518.24 1.81 8.2 1.18 -- -5.85 -- -- -2.58 -- 222.1 1069 10 13
344.29 0.864 7.81 -- 9.46 6.77 -- -- -0.117 13.6 28.44 325 14.9 17.2
3995.72 2.95 8.16 -2.48 -- -- -- -- -1.38 -- -- -- -- --
794.4 1.32 7.99 -- 7.35 -- -- -- -0.99 13 -- -- -- --
472.56 1.01 7.98 -- -- 8.33 -- -- -1.04 -- 90.02 1216 21.3 10.8
4157.31 3.01 8.1 -- -- -- -- -- -1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.63 temperature 30 270 < th dose dependent rect. 15 18
63 342.41 temperature 10 270 > th dose dependent rect. 7 22
74 346.30 temperature 25 270 < th dose dependent rect. 1 23
91 351.71 temperature 25 270 < th dose dependent no NA NA
106 356.49 temperature 15 90 > th dose dependent rect. 9 20
109 356.82 temperature 25 270 < th dose dependent sin 11 NA
110 356.89 temperature 25 270 < th dose dependent rect. 19 23
114 357.85 temperature 20 90 > th dose independent rect. 9 20
129 360.29 temperature 20 90 > th dose independent rect. 20 9
133 360.41 temperature 15 270 > th dose dependent rect. 18 11
135 360.82 temperature 25 720 < th dose dependent sin 17 NA
137 361.04 temperature 25 720 < th dose dependent rect. 10 15
145 362.02 temperature 25 720 < th dose dependent rect. 15 10
170 364.39 temperature 10 720 > th dose dependent rect. 16 13
178 364.92 temperature 10 270 > th dose dependent sin 10 NA
184 365.59 temperature 25 270 < th dose dependent rect. 22 23
201 367.47 temperature 20 90 > th dose independent rect. 11 18
401 383.95 temperature 20 10 > th dose independent rect. 10 20
426 385.93 temperature 15 270 > th dose dependent rect. 17 22
427 385.98 temperature 20 10 > th dose independent rect. 20 10
523 391.37 temperature 15 720 > th dose dependent rect. 17 5
564 393.26 temperature 15 720 > th dose dependent sin 15 NA
578 393.81 temperature 10 720 > th dose dependent rect. 10 18
585 394.10 temperature 15 10 > th dose dependent rect. 9 21
808 402.35 temperature 15 10 > th dose dependent rect. 8 23
952 408.17 temperature 10 720 > th dose dependent rect. 16 20