BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0128400 Os11g0128400|AK102291
(604 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0128400 CDC45-like protein family protein 1011 0.0
Os12g0124700 CDC45-like protein family protein 1005 0.0
>Os11g0128400 CDC45-like protein family protein
Length = 604
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/604 (85%), Positives = 516/604 (85%)
Query: 1 MVRELRLDSFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCALKVLTHVLSADSIRFSI 60
MVRELRLDSFY CALKVLTHVLSADSIRFSI
Sbjct: 1 MVRELRLDSFYARLRAAAAASAADASSPLLILPSAADADALCALKVLTHVLSADSIRFSI 60
Query: 61 YPVXXXXXXXXXXXXXXXXHPLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS 120
YPV HPLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS
Sbjct: 61 YPVASAAAAASLLASFSASHPLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS 120
Query: 121 AANDRVVVLFTTDDEHTADLSYDFDVXXXXXXXXXXXQGEADDHLRVXXXXXXXXXXXXX 180
AANDRVVVLFTTDDEHTADLSYDFDV QGEADDHLRV
Sbjct: 121 AANDRVVVLFTTDDEHTADLSYDFDVSSLADASDLSAQGEADDHLRVAEEDEDSDASDSD 180
Query: 181 XXXXXXXXXXXXXXXXXXANGDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT 240
ANGDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT
Sbjct: 181 SDGEGGRRKRRRLSDDAEANGDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT 240
Query: 241 NELLWLACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR 300
NELLWLACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR
Sbjct: 241 NELLWLACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR 300
Query: 301 APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA 360
APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA
Sbjct: 301 APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA 360
Query: 361 DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL 420
DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL
Sbjct: 361 DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL 420
Query: 421 LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT 480
LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT
Sbjct: 421 LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT 480
Query: 481 GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE 540
GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE
Sbjct: 481 GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE 540
Query: 541 KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL 600
KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL
Sbjct: 541 KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL 600
Query: 601 TEKL 604
TEKL
Sbjct: 601 TEKL 604
>Os12g0124700 CDC45-like protein family protein
Length = 604
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/604 (84%), Positives = 514/604 (85%)
Query: 1 MVRELRLDSFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCALKVLTHVLSADSIRFSI 60
MVRELRLDSFY CALKVLTHVLSADSIRFSI
Sbjct: 1 MVRELRLDSFYARLHAAAAASAADASSPLLILPSAADADALCALKVLTHVLSADSIRFSI 60
Query: 61 YPVXXXXXXXXXXXXXXXXHPLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS 120
YPV PLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS
Sbjct: 61 YPVASAAAAASLLASFSASQPLCLLLINWGAHRDLRAVLPPAATAFVVDSHRPIHLHNLS 120
Query: 121 AANDRVVVLFTTDDEHTADLSYDFDVXXXXXXXXXXXQGEADDHLRVXXXXXXXXXXXXX 180
AANDRVVVLFTTDDEHTADLSYDFDV QGEADDHLRV
Sbjct: 121 AANDRVVVLFTTDDEHTADLSYDFDVSSLADASDLSAQGEADDHLRVAEEDEDSDASDSD 180
Query: 181 XXXXXXXXXXXXXXXXXXANGDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT 240
A+GDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT
Sbjct: 181 SDGEGGRRKRRRLSDDAEADGDPERLFGKLRREYYRLGTFHGKPSGCLMYELAHALRKNT 240
Query: 241 NELLWLACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR 300
NELLW ACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR
Sbjct: 241 NELLWFACVSLTDQFVHERITNERYQAAVMELEQHINGSGNLDPSGVGAVVTLKDGTKIR 300
Query: 301 APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA 360
APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA
Sbjct: 301 APEASRIAYEDEPRLMLLREWSLFDSMLCSSYVATKLKTWSDNGLKKLKLLLARMGFPLA 360
Query: 361 DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL 420
DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL
Sbjct: 361 DCQKRFQYMSMEVKRKMRDEFDRFLPEYGLTEFYYRSFLRVHGYRSKVSAADVVYGVTAL 420
Query: 421 LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT 480
LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT
Sbjct: 421 LESLNAESKDSKGSSAAEQFWVAYSALSLSNVDQLRKGMQSAIEIQRAILRQGSSAITKT 480
Query: 481 GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE 540
GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE
Sbjct: 481 GFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCFFLMDALRERGARMKPLICACLAREPE 540
Query: 541 KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL 600
KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL
Sbjct: 541 KVLVVGVCGKPRLGAVKGNAFGNAFRSAAEEIGADYFHDMFESSWIVLDVVAVSSFMIRL 600
Query: 601 TEKL 604
TEKL
Sbjct: 601 TEKL 604
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,010,717
Number of extensions: 639824
Number of successful extensions: 1200
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1194
Number of HSP's successfully gapped: 2
Length of query: 604
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 497
Effective length of database: 11,448,903
Effective search space: 5690104791
Effective search space used: 5690104791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)