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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0128400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CDC45-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0233) R2 : 0.00385
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.065 (0.049) R2dN8 : 0.00497 R2N8 : 0.00385
σ : 0.438
deviance : 88.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.32 0.429 3.35 -0.102 0.205 0.764 -0.326 -3.05 0.0903 6.68 1000 715 -- --
84.13 0.427 3.32 0.063 0.203 0.236 -0.31 -- 0.0889 6.46 1000 734 -- --
83.56 0.426 3.35 -0.0976 0.2 0.744 -- -2.89 0.0942 6.95 999.9 676 -- --
84.35 0.428 3.32 0.064 0.205 0.224 -- -- 0.0739 6.56 1001 350 -- --
85.75 0.431 3.36 -0.112 -- 0.794 -- -3.24 0.0945 -- 999.8 741 -- --
85.47 0.433 3.32 0.102 0.199 -- -0.359 -- 0.0709 6.3 -- -- -- --
85.74 0.434 3.32 0.0983 0.199 -- -- -- 0.0725 6.79 -- -- -- --
86.55 0.433 3.32 0.072 -- 0.231 -- -- 0.0958 -- 1000 374 -- --
84.42 0.428 3.32 -- 0.206 0.239 -- -- 0.0847 6.76 1001 362 -- --
87.82 0.438 3.33 0.103 -- -- -- -- 0.0764 -- -- -- -- --
86 0.434 3.33 -- 0.2 -- -- -- 0.0616 6.76 -- -- -- --
86.65 0.434 3.33 -- -- 0.233 -- -- 0.0876 -- 1000 374 -- --
88.09 0.438 3.33 -- -- -- -- -- 0.065 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.60 radiation 1.0 43200 < th dose dependent rect. 3 1
2 76.77 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 76.77 atmosphere 1005.0 90 > th dose dependent rect. 2 1
17 77.46 wind 9.0 1440 < th dose independent rect. 3 1
18 77.46 temperature 10.0 1440 > th dose independent rect. 3 1
21 77.46 temperature 30.0 1440 < th dose independent rect. 3 1
25 77.46 humidity 50.0 1440 > th dose independent rect. 3 1
34 77.46 atmosphere 995.0 1440 > th dose independent rect. 3 1
35 77.46 radiation 1.0 1440 < th dose independent rect. 3 1
55 77.46 temperature 10.0 1440 > th dose independent rect. 4 23
66 77.50 temperature 25.0 90 > th dose independent rect. 2 1
67 77.58 temperature 20.0 30 > th dose dependent rect. 2 1
73 77.63 atmosphere 1005.0 30 > th dose independent rect. 2 1
75 77.64 wind 3.0 30 < th dose independent rect. 2 1
79 77.66 wind 5.0 30 < th dose dependent rect. 2 1
85 77.69 humidity 90.0 30 > th dose independent rect. 2 1
87 77.70 temperature 10.0 30 > th dose independent rect. 2 1
89 77.70 temperature 30.0 30 < th dose independent rect. 2 1
90 77.70 humidity 50.0 30 > th dose independent rect. 2 1
94 77.70 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 77.70 radiation 1.0 30 < th dose independent rect. 2 1
101 77.70 precipitation 0.1 30 < th dose independent rect. 2 1
102 77.70 temperature 10.0 30 > th dose independent rect. 3 23
103 77.70 humidity 50.0 30 > th dose dependent rect. 2 1
106 77.70 radiation 1.0 30 < th dose dependent rect. 2 1
111 77.70 precipitation 0.1 30 < th dose dependent rect. 2 1
119 77.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
124 77.87 temperature 30.0 30 < th dose dependent rect. 2 1
125 77.88 wind 1.0 30 > th dose independent rect. 2 1
127 77.99 precipitation 0.1 30 < th dose independent rect. 3 23
128 77.99 precipitation 0.1 30 < th dose dependent rect. 3 23
181 78.58 wind 9.0 30 < th dose independent rect. 3 23
202 79.60 humidity 50.0 30 > th dose independent rect. 3 23
238 80.29 humidity 90.0 90 < th dose independent rect. 2 1
240 80.41 precipitation 0.1 720 < th dose independent rect. 15 8
241 80.41 precipitation 0.1 720 < th dose dependent rect. 15 8
242 80.43 atmosphere 995.0 720 > th dose independent rect. 23 16
250 80.75 temperature 10.0 720 > th dose independent rect. 15 8
251 80.75 temperature 10.0 720 > th dose independent rect. 23 16
255 80.93 temperature 10.0 720 > th dose independent rect. 3 8
256 80.93 humidity 90.0 90 < th dose independent rect. 1 8
257 80.93 atmosphere 995.0 720 > th dose independent rect. 3 8
258 80.93 temperature 10.0 720 > th dose independent rect. 11 16
262 81.01 humidity 50.0 720 > th dose independent rect. 3 8
263 81.03 precipitation 0.1 720 < th dose independent rect. 11 16
264 81.03 precipitation 0.1 720 < th dose dependent rect. 11 16
265 81.05 temperature 10.0 30 > th dose dependent rect. 3 23
266 81.09 wind 9.0 720 < th dose independent rect. 3 8
286 81.57 humidity 50.0 720 > th dose independent rect. 23 16
300 81.72 atmosphere 995.0 720 > th dose independent rect. 15 8
308 81.84 atmosphere 995.0 720 > th dose independent rect. 11 16
309 81.84 temperature 30.0 30 < th dose independent rect. 3 23
312 81.85 atmosphere 1015.0 720 < th dose independent rect. 3 8
315 81.87 wind 9.0 720 < th dose independent rect. 15 8
326 82.01 atmosphere 1015.0 30 < th dose independent rect. 3 23
327 82.01 atmosphere 1005.0 10 > th dose dependent rect. 2 7
328 82.02 temperature 20.0 90 > th dose independent rect. 3 3
329 82.02 humidity 80.0 720 > th dose dependent rect. 3 1
333 82.05 precipitation 0.1 720 < th dose independent rect. 23 16
334 82.05 precipitation 0.1 720 < th dose dependent rect. 23 16
337 82.06 precipitation 0.1 720 < th dose independent rect. 3 8
338 82.06 precipitation 0.1 720 < th dose dependent rect. 3 8
347 82.09 wind 9.0 30 < th dose dependent rect. 3 23
352 82.19 wind 1.0 10 < th dose independent rect. 6 21
353 82.20 humidity 80.0 14400 < th dose dependent rect. 3 6
368 82.28 radiation 40.0 90 < th dose dependent rect. 6 21
373 82.34 atmosphere 1000.0 720 > th dose independent rect. 17 22
377 82.38 wind 1.0 10 < th dose independent rect. 13 14
379 82.38 radiation 40.0 90 < th dose independent rect. 6 21
380 82.38 radiation 10.0 30 < th dose dependent rect. 3 23
383 82.39 wind 1.0 14400 < th dose dependent rect. 6 1
387 82.40 radiation 40.0 90 < th dose dependent rect. 13 14
389 82.41 humidity 70.0 14400 > th dose independent rect. 8 1
418 82.43 radiation 10.0 30 > th dose independent rect. 17 17
421 82.44 radiation 10.0 30 > th dose independent rect. 6 4
447 82.49 humidity 70.0 14400 > th dose independent rect. 4 5
449 82.49 wind 3.0 30 < th dose dependent rect. 2 7
450 82.49 atmosphere 995.0 30 > th dose dependent rect. 3 23
451 82.50 humidity 90.0 720 > th dose independent rect. 3 1
458 82.50 wind 1.0 10 < th dose independent rect. 17 10
473 82.52 humidity 70.0 14400 < th dose independent rect. 8 1
480 82.54 radiation 10.0 30 < th dose independent rect. 3 23
499 82.55 radiation 40.0 90 > th dose independent rect. 14 21
507 82.56 wind 5.0 14400 < th dose independent rect. 11 1
508 82.56 atmosphere 1000.0 720 > th dose independent rect. 14 1
512 82.57 radiation 20.0 90 < th dose dependent rect. 8 19
516 82.59 atmosphere 995.0 720 > th dose independent rect. 8 7
517 82.59 wind 1.0 720 > th dose independent rect. 15 8
527 82.61 wind 3.0 30 < th dose dependent rect. 2 5
529 82.62 wind 1.0 10 < th dose independent rect. 8 19
532 82.62 humidity 90.0 90 < th dose dependent rect. 1 8
535 82.63 radiation 40.0 90 > th dose independent rect. 9 2
564 82.64 radiation 20.0 90 < th dose independent rect. 6 21
576 82.66 wind 1.0 14400 < th dose independent rect. 6 1
577 82.66 humidity 90.0 10 < th dose independent rect. 7 3
581 82.67 wind 5.0 14400 < th dose independent rect. 10 5
582 82.67 humidity 80.0 10 < th dose independent rect. 24 10
585 82.67 wind 5.0 14400 < th dose dependent rect. 10 2
589 82.68 temperature 25.0 270 > th dose independent rect. 23 4
590 82.68 humidity 80.0 10 < th dose independent rect. 4 6
593 82.69 wind 5.0 14400 < th dose independent rect. 11 3
594 82.69 wind 1.0 10 < th dose independent rect. 2 5
599 82.69 radiation 40.0 90 < th dose independent rect. 13 14
600 82.69 atmosphere 1000.0 720 > th dose independent rect. 3 22
601 82.69 radiation 1.0 720 > th dose dependent rect. 15 1
602 82.70 wind 3.0 14400 > th dose independent rect. 10 1
612 82.72 humidity 70.0 14400 < th dose independent rect. 6 3
654 82.75 humidity 90.0 90 < th dose independent rect. 1 20
657 82.75 humidity 90.0 10 < th dose dependent rect. 1 9
658 82.76 wind 5.0 14400 > th dose independent rect. 10 5
665 82.77 wind 1.0 14400 > th dose independent rect. 5 2
669 82.77 radiation 1.0 720 > th dose independent rect. 8 7
670 82.77 wind 9.0 720 < th dose independent rect. 15 17
671 82.77 wind 1.0 10 > th dose independent rect. 10 20
672 82.77 atmosphere 995.0 10 > th dose independent rect. 10 21
685 82.79 wind 7.0 720 < th dose independent rect. 17 12
686 82.79 humidity 90.0 90 < th dose independent rect. 1 22
693 82.80 wind 9.0 720 < th dose independent rect. 23 16
695 82.80 humidity 90.0 10 < th dose dependent rect. 5 5
699 82.81 humidity 50.0 4320 > th dose independent rect. 14 1
747 82.83 wind 7.0 720 < th dose independent rect. 16 15
749 82.83 wind 1.0 90 < th dose dependent rect. 8 1
750 82.83 temperature 10.0 720 > th dose dependent rect. 3 1
755 82.84 radiation 40.0 270 > th dose independent sin 12 NA
758 82.84 wind 5.0 14400 > th dose independent rect. 11 3
762 82.84 atmosphere 1015.0 90 < th dose independent rect. 5 22
772 82.85 radiation 10.0 30 < th dose independent rect. 3 5
773 82.85 wind 9.0 720 < th dose independent rect. 20 7
777 82.85 temperature 10.0 30 > th dose dependent rect. 10 16
820 82.87 radiation 20.0 720 > th dose independent rect. 15 1
865 82.89 atmosphere 1000.0 90 > th dose independent rect. 3 14
874 82.90 temperature 15.0 720 > th dose independent rect. 8 7
887 82.91 humidity 90.0 10 > th dose independent rect. 24 3
898 82.92 atmosphere 995.0 4320 > th dose independent rect. 4 4
900 82.92 atmosphere 1000.0 90 > th dose independent rect. 3 12
901 82.92 atmosphere 1015.0 720 < th dose independent rect. 3 17
902 82.92 atmosphere 1000.0 10 > th dose independent rect. 11 23
906 82.92 humidity 90.0 90 < th dose dependent rect. 2 1
914 82.93 atmosphere 1000.0 90 > th dose independent rect. 3 10
915 82.93 wind 7.0 90 < th dose independent rect. 15 12
931 82.94 temperature 10.0 30 > th dose dependent rect. 10 20
936 82.95 precipitation 0.1 720 < th dose independent rect. 5 12
940 82.95 radiation 10.0 90 < th dose dependent rect. 3 5
941 82.95 precipitation 0.1 720 < th dose dependent rect. 5 12
955 82.97 radiation 10.0 10 > th dose independent rect. 6 1
969 82.97 temperature 10.0 720 > th dose independent rect. 20 7
970 82.97 temperature 30.0 720 < th dose independent rect. 20 7
971 82.97 humidity 50.0 720 > th dose independent rect. 20 7
974 82.97 atmosphere 995.0 720 > th dose independent rect. 20 7
977 82.97 radiation 1.0 720 < th dose independent rect. 20 7
996 82.97 temperature 10.0 720 > th dose independent rect. 3 17
998 82.97 radiation 10.0 10 > th dose dependent rect. 6 1