BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0118600 Os11g0118600|AK121697
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0117800  Protein of unknown function DUF1191 family pro...   531   e-151
Os11g0118600  Protein of unknown function DUF1191 family pro...   531   e-151
Os04g0580500  Protein of unknown function DUF1191 family pro...    81   9e-16

>Os12g0117800 Protein of unknown function DUF1191 family protein
          Length = 312

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/296 (89%), Positives = 265/296 (89%)

Query: 17  TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR 76
           TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR
Sbjct: 17  TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR 76

Query: 77  RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA 136
           RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA
Sbjct: 77  RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA 136

Query: 137 NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST 196
           NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST
Sbjct: 137 NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST 196

Query: 197 YRRGHFSIVVNSSAIPPGPVPSGNXXXXXXXXXGRSKGSSKGWKIXXXXXXXXXXXXXXX 256
           YRRGHFSIVVNSSAIPPGPVPSGN         GRSKGSSKGWKI               
Sbjct: 197 YRRGHFSIVVNSSAIPPGPVPSGNITPPIPTPTGRSKGSSKGWKIAVGVVGGVIALVLLA 256

Query: 257 XXXXXXXRYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA 312
                  RYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA
Sbjct: 257 SLVVCLARYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA 312



>Os11g0118600 Protein of unknown function DUF1191 family protein
          Length = 312

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/296 (89%), Positives = 265/296 (89%)

Query: 17  TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR 76
           TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR
Sbjct: 17  TSRVAAQASSPARALDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLR 76

Query: 77  RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA 136
           RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA
Sbjct: 77  RKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAA 136

Query: 137 NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST 196
           NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST
Sbjct: 137 NLSAVGLQELSFVASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRDLEASNVCST 196

Query: 197 YRRGHFSIVVNSSAIPPGPVPSGNXXXXXXXXXGRSKGSSKGWKIXXXXXXXXXXXXXXX 256
           YRRGHFSIVVNSSAIPPGPVPSGN         GRSKGSSKGWKI               
Sbjct: 197 YRRGHFSIVVNSSAIPPGPVPSGNITPPIPTPTGRSKGSSKGWKIAVGVVGGVIALVLLA 256

Query: 257 XXXXXXXRYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA 312
                  RYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA
Sbjct: 257 SLVVCLARYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA 312



>Os04g0580500 Protein of unknown function DUF1191 family protein
          Length = 337

 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 68/132 (51%), Gaps = 7/132 (5%)

Query: 45  HPHTGIVYNATVPANLTGVALSAVRLRSGSLRRKGFSDYFDFTVPTGIVVQPYVERVVLV 104
           H  TG+ Y  ++P +L+GVA    R R+GSLRR G   + +F VP G+ V+     ++ V
Sbjct: 82  HRRTGVTYPVSLPGSLSGVAADVARFRAGSLRRYGVRRFGEFAVPPGLAVRGQASHLLAV 141

Query: 105 YHNLGNWS---DHYYPLPGYTYLSPVLGLLLYDAANLSAVGLQELSFVASGSPISINFSD 161
             NLGN S   D Y    GY   SPVLGL  Y  A     G   L  + + + I +NFS 
Sbjct: 142 RANLGNLSSVFDEYAASGGYRIASPVLGLTFYGLARRG--GTARLEVLVTAAAIRVNFS- 198

Query: 162 VRSVPAGGPAPR 173
             +VPA  P  R
Sbjct: 199 -MAVPALQPGAR 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,506,932
Number of extensions: 395116
Number of successful extensions: 693
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)