BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0113200 Os11g0113200|J033045G10
         (534 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0113200  Conserved hypothetical protein                      734   0.0  
Os12g0112600  Conserved hypothetical protein                      560   e-160

>Os11g0113200 Conserved hypothetical protein
          Length = 534

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/534 (70%), Positives = 376/534 (70%)

Query: 1   MCILCAVQRWSRRVATMXXXXXXXXXXXXXXSQLLPAAYRFEVTSPRLACVSVLLLTLFW 60
           MCILCAVQRWSRRVATM              SQLLPAAYRFEVTSPRLACVSVLLLTLFW
Sbjct: 1   MCILCAVQRWSRRVATMLPWLVLPLILLWALSQLLPAAYRFEVTSPRLACVSVLLLTLFW 60

Query: 61  YEIXXXXXXXXXXXXXXXXXXXXXXXXXXXHKLRKTATRRCRNCNNPYRDQNPGGGKFMC 120
           YEI                           HKLRKTATRRCRNCNNPYRDQNPGGGKFMC
Sbjct: 61  YEILLPRLSLWRARRSARLREERRAHALQLHKLRKTATRRCRNCNNPYRDQNPGGGKFMC 120

Query: 121 SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS 180
           SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS
Sbjct: 121 SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS 180

Query: 181 SFCVSMRWFWREVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           SFCVSMRWFWREV                                               
Sbjct: 181 SFCVSMRWFWREVLRFGSSGDGDGLGRDGKRLAKEGENGAKAEESRVEKAKRKAEEKRLA 240

Query: 241 XXXXXXXXXXXXXXXXXXXXLVEERRRLRDEKAEAEERSKGATPVGEKDPXXXXXXXXXX 300
                               LVEERRRLRDEKAEAEERSKGATPVGEKDP          
Sbjct: 241 RLEKEMLEEEERKQREEMAKLVEERRRLRDEKAEAEERSKGATPVGEKDPRKEVERRRQE 300

Query: 301 XXXXXXXXXGSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD 360
                    GSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD
Sbjct: 301 RRRKDEKDKGSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD 360

Query: 361 ANNQGSKTVQSKAKYFGRMTXXXXXXXXXXXXXXXXXXXAQTSAPQVNKVTKPLVTVTDQ 420
           ANNQGSKTVQSKAKYFGRMT                   AQTSAPQVNKVTKPLVTVTDQ
Sbjct: 361 ANNQGSKTVQSKAKYFGRMTGGLLSSSRGFGGGSFFGRSAQTSAPQVNKVTKPLVTVTDQ 420

Query: 421 SNVVKRDTQPPXXXXXXXXXXXXNSWTNVHRPVSNKGIINCCSSLSVTITTYVINCFHPD 480
           SNVVKRDTQPP            NSWTNVHRPVSNKGIINCCSSLSVTITTYVINCFHPD
Sbjct: 421 SNVVKRDTQPPATAKSATAGGTTNSWTNVHRPVSNKGIINCCSSLSVTITTYVINCFHPD 480

Query: 481 YRLTNTICIFVMLLCRLVQMCSHSLLALKSHGTSCLVAQHLCHLVLMFLLQPVK 534
           YRLTNTICIFVMLLCRLVQMCSHSLLALKSHGTSCLVAQHLCHLVLMFLLQPVK
Sbjct: 481 YRLTNTICIFVMLLCRLVQMCSHSLLALKSHGTSCLVAQHLCHLVLMFLLQPVK 534



>Os12g0112600 Conserved hypothetical protein
          Length = 806

 Score =  560 bits (1444), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 294/454 (64%), Positives = 294/454 (64%)

Query: 1   MCILCAVQRWSRRVATMXXXXXXXXXXXXXXSQLLPAAYRFEVTSPRLACVSVLLLTLFW 60
           MCILCAVQRWSRRVATM              SQLLPAAYRFEVTSPRLACVSVLLLTLFW
Sbjct: 1   MCILCAVQRWSRRVATMLPWLVLPLILLWALSQLLPAAYRFEVTSPRLACVSVLLLTLFW 60

Query: 61  YEIXXXXXXXXXXXXXXXXXXXXXXXXXXXHKLRKTATRRCRNCNNPYRDQNPGGGKFMC 120
           YEI                           HKLRKTATRRCRNCNNPYRDQNPGGGKFMC
Sbjct: 61  YEILLPRLSLWRARRSARLREERRAHALQLHKLRKTATRRCRNCNNPYRDQNPGGGKFMC 120

Query: 121 SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS 180
           SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS
Sbjct: 121 SYCGHVSKRPVLDLGPAGTLPTGWPCTQDWPNAAGDPAYWLDLRCSSDNLYSGFSWRLFS 180

Query: 181 SFCVSMRWFWREVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           SFCVSMRWFWREV                                               
Sbjct: 181 SFCVSMRWFWREVLRFGSSGDGDGLGRDGKRLAKEGENGAKAEESRVEKAKRKAEEKRLA 240

Query: 241 XXXXXXXXXXXXXXXXXXXXLVEERRRLRDEKAEAEERSKGATPVGEKDPXXXXXXXXXX 300
                               LVEERRRLRDEKAEAEERSKGATPVGEKDP          
Sbjct: 241 RLEKEMLEEEERKQREEMAKLVEERRRLRDEKAEAEERSKGATPVGEKDPRKEVERRRQE 300

Query: 301 XXXXXXXXXGSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD 360
                    GSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD
Sbjct: 301 RRRKDEKDKGSSKSNSDCEDIERRVTREGERKRDSDRRNEPEKRDATRVGAEGHKPYNFD 360

Query: 361 ANNQGSKTVQSKAKYFGRMTXXXXXXXXXXXXXXXXXXXAQTSAPQVNKVTKPLVTVTDQ 420
           ANNQGSKTVQSKAKYFGRMT                   AQTSAPQVNKVTKPLVTVTDQ
Sbjct: 361 ANNQGSKTVQSKAKYFGRMTGGLLSSSRGFGGGSFFGRSAQTSAPQVNKVTKPLVTVTDQ 420

Query: 421 SNVVKRDTQPPXXXXXXXXXXXXNSWTNVHRPVS 454
           SNVVKRD QPP            NSWTNVHR VS
Sbjct: 421 SNVVKRDAQPPATAKSATAGGTTNSWTNVHRSVS 454



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,567,482
Number of extensions: 472788
Number of successful extensions: 1248
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 4
Length of query: 534
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 428
Effective length of database: 11,501,117
Effective search space: 4922478076
Effective search space used: 4922478076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)