BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0111000 Os11g0111000|AK111408
         (252 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0111000  Conserved hypothetical protein                      124   9e-29

>Os11g0111000 Conserved hypothetical protein
          Length = 252

 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 93/252 (36%)

Query: 1   MLTGNEEDDXXXXXXXXXXXXXXXTVETLPLWLRCXXXXXXXXXXXXXXXXXGGIPVAQX 60
           MLTGNEEDD               TVETLPLWLRC                 GGIPVAQ 
Sbjct: 1   MLTGNEEDDPPLPAPLAQPSGPAPTVETLPLWLRCHPPALPLPSRRSPPSHHGGIPVAQP 60

Query: 61  XXXXXXXXXXXATAAAXXXXXXXXXXXXXLGWNRTARLRRARSHPAGRTHXXXXXXXXXX 120
                      ATAAA             LGWNRTARLRRARSHPAGRTH          
Sbjct: 61  SRPGRSRPHRRATAAAPSRHSPTPHRRRRLGWNRTARLRRARSHPAGRTHPLPPCPRRRS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVRXXXXXXXXXXXXXXXXXXXXXXXLCAV 180
                                         MVR                       LCAV
Sbjct: 121 ASSPVPLPAAMPLLFPAATPLPLPAALPPPMVRGPASHAGEAGSGGEGSGSGRRPPLCAV 180

Query: 181 GTSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSPGAGEVVAPCTADRRLPNDAX 240
           GTSC                                DPSPGAGEVVAPCTADRRLPNDA 
Sbjct: 181 GTSCPSSRRAARRRPRRTHRTPPPPPVGLFPGGAVPDPSPGAGEVVAPCTADRRLPNDAL 240

Query: 241 XXXXXXGGPSPA 252
                 GGPSPA
Sbjct: 241 LRLLRRGGPSPA 252



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,593,232
Number of extensions: 69580
Number of successful extensions: 67
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)