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Os11g0111000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.25 (0.019) R2 : 4.76e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00588 (0.0399) R2dN8 : 6.15e-05 R2N8 : 4.76e-05
σ : 0.357
deviance : 58.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.82 0.296 8.81 1.45 0.275 42.5 -0.386 92.9 -0.000541 23.9 15 1440 -- --
43.62 0.31 8.25 0.364 0.299 -1.49 -0.548 -- 0.0231 23.9 15 1440 -- --
40.36 0.296 8.8 1.45 0.278 42.7 -- 93.3 0.00267 0.429 15 1412 -- --
40.08 0.295 8.25 0.245 0.315 -1.39 -- -- 0.000726 0.63 14.8 2042 -- --
44.78 0.312 8.85 1.56 -- 43.3 -- 94 0.00456 -- 15 993 -- --
47.78 0.324 8.24 0.428 0.276 -- -0.356 -- 0.0385 0.0973 -- -- -- --
48.26 0.325 8.24 0.441 0.28 -- -- -- 0.0393 0.601 -- -- -- --
44.64 0.311 8.25 0.211 -- -1.35 -- -- -0.0139 -- 14.8 2170 -- --
41.07 0.298 8.26 -- 0.292 -1.58 -- -- -0.0392 0.916 14.9 2113 -- --
53.17 0.341 8.24 0.451 -- -- -- -- 0.0442 -- -- -- -- --
53.39 0.342 8.25 -- 0.287 -- -- -- -0.00982 0.676 -- -- -- --
45.65 0.315 8.26 -- -- -1.51 -- -- -0.0465 -- 14.87 2170 -- --
58.53 0.357 8.25 -- -- -- -- -- -0.00588 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.34 wind 1.0 14400 < th dose independent rect. 5 1
2 37.62 temperature 15.0 720 > th dose independent rect. 3 19
5 37.79 temperature 15.0 1440 > th dose independent rect. 8 13
6 37.86 humidity 80.0 1440 > th dose dependent rect. 9 2
8 37.98 wind 1.0 14400 > th dose independent rect. 5 1
9 38.06 wind 1.0 14400 < th dose dependent rect. 5 1
15 38.22 temperature 15.0 14400 < th dose independent rect. 13 14
18 38.26 temperature 15.0 14400 > th dose independent sin 18 NA
19 38.26 temperature 15.0 14400 > th dose independent rect. 15 10
29 38.32 temperature 15.0 14400 > th dose independent rect. 11 16
31 38.33 temperature 15.0 14400 < th dose independent sin 17 NA
34 38.33 temperature 15.0 14400 > th dose independent rect. 12 14
43 38.36 humidity 90.0 720 < th dose independent rect. 9 6
49 38.37 temperature 15.0 14400 > th dose independent rect. 7 20
50 38.37 temperature 15.0 14400 < th dose independent rect. 6 22
55 38.38 temperature 15.0 720 > th dose independent rect. 10 21
90 38.47 temperature 15.0 14400 > th dose independent rect. 6 15
103 38.50 temperature 15.0 14400 > th dose independent sin 22 NA
109 38.51 humidity 90.0 1440 > th dose independent rect. 9 2
120 38.54 humidity 90.0 1440 < th dose independent rect. 9 2
121 38.54 temperature 15.0 14400 < th dose independent rect. 4 19
130 38.57 temperature 15.0 14400 < th dose independent sin 0 NA
137 38.57 humidity 70.0 43200 < th dose dependent rect. 3 4
145 38.59 atmosphere 1015.0 1440 < th dose independent rect. 24 8
147 38.59 temperature 15.0 14400 < th dose independent rect. 5 16
154 38.61 precipitation 0.1 1440 > th dose independent rect. 8 3
157 38.61 precipitation 0.1 1440 > th dose dependent rect. 8 3
172 38.65 humidity 70.0 43200 < th dose dependent rect. 24 7
174 38.66 radiation 1.0 1440 < th dose independent rect. 10 2
178 38.66 radiation 1.0 1440 < th dose dependent rect. 10 2
189 38.69 temperature 15.0 14400 < th dose independent rect. 6 4
193 38.69 temperature 15.0 14400 < th dose independent rect. 24 23
196 38.70 temperature 15.0 720 > th dose independent rect. 21 23
197 38.70 humidity 70.0 43200 < th dose dependent rect. 23 9
214 38.72 temperature 15.0 14400 < th dose independent rect. 10 23
224 38.75 temperature 15.0 14400 > th dose independent rect. 19 3
253 38.79 temperature 15.0 14400 < th dose independent no NA NA
257 38.80 temperature 15.0 14400 < th dose independent rect. 20 2
267 38.81 temperature 15.0 14400 < th dose independent rect. 21 23
273 38.82 temperature 15.0 14400 < th dose independent rect. 13 23
274 38.83 temperature 15.0 720 > th dose independent rect. 18 13
278 38.83 temperature 15.0 14400 < th dose independent rect. 15 23
302 38.87 temperature 15.0 14400 < th dose independent rect. 24 2
309 38.88 atmosphere 1015.0 1440 < th dose independent rect. 24 10
317 38.88 precipitation 0.1 1440 > th dose dependent rect. 6 8
327 38.90 temperature 15.0 720 > th dose independent sin 23 NA
332 38.90 temperature 15.0 14400 < th dose independent rect. 24 20
344 38.91 temperature 15.0 4320 < th dose dependent rect. 6 4
353 38.92 temperature 15.0 720 > th dose independent rect. 7 20
354 38.92 temperature 15.0 720 > th dose independent rect. 19 20
357 38.92 temperature 15.0 720 > th dose independent rect. 5 22
363 38.93 humidity 70.0 43200 < th dose independent rect. 24 7
377 38.95 temperature 15.0 14400 < th dose independent rect. 22 4
388 38.96 temperature 20.0 1440 < th dose dependent rect. 9 1
390 38.97 radiation 1.0 1440 < th dose independent rect. 8 6
391 38.97 precipitation 0.1 1440 > th dose independent rect. 6 8
396 38.97 radiation 1.0 1440 < th dose dependent rect. 8 6
397 38.97 temperature 15.0 4320 < th dose dependent rect. 5 8
398 38.98 temperature 15.0 270 > th dose independent sin 7 NA
408 38.99 temperature 15.0 270 > th dose independent sin 21 NA
409 38.99 temperature 15.0 90 > th dose independent sin 3 NA
418 38.99 temperature 20.0 1440 < th dose dependent rect. 9 4
421 38.99 radiation 1.0 1440 < th dose dependent rect. 8 8
424 39.00 temperature 15.0 90 > th dose independent sin 19 NA
445 39.01 humidity 50.0 43200 < th dose dependent rect. 3 7
454 39.02 temperature 15.0 14400 < th dose independent rect. 5 6
461 39.02 humidity 50.0 43200 < th dose dependent rect. 19 16
462 39.03 radiation 1.0 1440 > th dose independent rect. 9 3
464 39.03 temperature 15.0 1440 > th dose independent rect. 4 10
481 39.04 temperature 15.0 1440 > th dose independent rect. 4 12
507 39.06 precipitation 0.1 720 > th dose dependent rect. 5 12
508 39.07 temperature 15.0 90 > th dose independent sin 14 NA
521 39.08 temperature 15.0 270 > th dose independent sin 5 NA
524 39.08 humidity 60.0 43200 < th dose independent rect. 4 3
527 39.08 temperature 20.0 1440 < th dose dependent rect. 11 1
551 39.11 radiation 1.0 1440 > th dose independent rect. 8 5
562 39.12 temperature 15.0 1440 > th dose independent rect. 4 4
565 39.12 precipitation 0.1 1440 < th dose independent rect. 6 8
574 39.12 precipitation 0.1 1440 < th dose dependent rect. 6 8
614 39.16 precipitation 0.1 720 < th dose independent sin 1 NA
616 39.16 temperature 15.0 1440 > th dose independent rect. 4 6
617 39.16 precipitation 0.1 720 > th dose independent rect. 5 12
621 39.16 precipitation 0.1 720 < th dose dependent sin 1 NA
636 39.18 atmosphere 1015.0 1440 < th dose independent rect. 24 3
682 39.23 humidity 70.0 43200 > th dose independent rect. 23 8
692 39.24 temperature 15.0 270 > th dose independent rect. 10 13
712 39.26 humidity 50.0 14400 < th dose dependent rect. 9 2
769 39.32 temperature 15.0 270 > th dose independent rect. 18 23
783 39.34 temperature 15.0 720 > th dose independent rect. 10 7
794 39.34 humidity 90.0 720 > th dose dependent rect. 8 9
809 39.36 temperature 15.0 4320 < th dose dependent rect. 6 1
817 39.37 humidity 60.0 43200 > th dose independent rect. 3 4
825 39.38 temperature 15.0 1440 < th dose independent rect. 4 7
863 39.41 temperature 15.0 14400 > th dose independent rect. 6 5
875 39.42 temperature 15.0 14400 < th dose independent rect. 8 13
885 39.43 temperature 15.0 90 > th dose independent sin 1 NA
891 39.43 temperature 15.0 90 > th dose independent rect. 3 23
892 39.43 temperature 15.0 14400 > th dose independent rect. 24 23
900 39.44 temperature 15.0 1440 < th dose independent rect. 4 3
910 39.45 temperature 15.0 14400 > th dose independent rect. 24 1
934 39.46 temperature 15.0 14400 > th dose independent rect. 10 23
935 39.46 wind 9.0 1440 > th dose dependent rect. 11 1
947 39.47 temperature 15.0 14400 > th dose independent rect. 2 21
978 39.49 humidity 90.0 720 > th dose dependent rect. 8 11
987 39.50 temperature 15.0 14400 > th dose independent rect. 21 23