BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0573900 Os10g0573900|AK101216
         (523 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0573900  NMD3 family protein                                 952   0.0  

>Os10g0573900 NMD3 family protein
          Length = 523

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/510 (91%), Positives = 465/510 (91%)

Query: 14  MFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQP 73
           MFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQP
Sbjct: 14  MFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQP 73

Query: 74  PRSWLRAGPESPELMQIXXXXXXXXXXXXXVSLSAAEFVFSEPHSXXXXXXXXXXXEVFN 133
           PRSWLRAGPESPELMQI             VSLSAAEFVFSEPHS           EVFN
Sbjct: 74  PRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFN 133

Query: 134 AVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQ 193
           AVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQ
Sbjct: 134 AVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQ 193

Query: 194 ASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHT 253
           ASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHT
Sbjct: 194 ASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHT 253

Query: 254 FSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRV 313
           FSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRV
Sbjct: 254 FSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRV 313

Query: 314 YNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHL 373
           YNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHL
Sbjct: 314 YNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHL 373

Query: 374 GHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPM 433
           GHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPM
Sbjct: 374 GHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPM 433

Query: 434 EEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVP 493
           EEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVP
Sbjct: 434 EEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVP 493

Query: 494 IXXXXXXXXXXXXXXXXXXXXXNQHAVMVG 523
           I                     NQHAVMVG
Sbjct: 494 IEELIEDLSLGDDEEEDEGGEGNQHAVMVG 523



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,958,514
Number of extensions: 644166
Number of successful extensions: 1593
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1592
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 418
Effective length of database: 11,553,331
Effective search space: 4829292358
Effective search space used: 4829292358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)