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Os10g0573900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NMD3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0193) R2 : 0.754
β1 : 1.28 (0.0709) R2dD : 0.182 R2D : 0.161
β2 : 1.64 (0.0496) R2dC : 0.594 R2C : 0.576
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0703 (0.0413) R2dN8 : 0.0021 R2N8 : -0.00733
σ : 0.364
deviance : 60.39
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.17 0.326 10.8 2.06 1.57 -0.737 0.451 2.25 0.323 16.4 23.87 1275 -- --
52.52 0.338 10.9 1.48 1.61 -0.439 0.367 -- 0.207 16.4 22.23 6977 -- --
48.69 0.325 10.8 2.02 1.57 -0.735 -- 2.15 0.31 16.5 24.05 1265 -- --
52.55 0.338 10.9 1.61 1.61 -0.659 -- -- 0.226 16.4 0.7777 7007 -- --
164.16 0.6 10.9 1.07 -- 1.25 -- 0.355 -0.101 -- 24.05 1265 -- --
59.89 0.363 10.9 1.27 1.64 -- 0.424 -- 0.068 16.3 -- -- -- --
60.39 0.364 10.9 1.28 1.64 -- -- -- 0.0703 16.3 -- -- -- --
164.24 0.599 11 1.02 -- 1.28 -- -- -0.114 -- 24.05 1265 -- --
83.98 0.427 11 -- 1.64 0.708 -- -- -0.283 16.3 -10.26 47520 -- --
205.4 0.67 10.9 1.21 -- -- -- -- 0.0268 -- -- -- -- --
103.29 0.475 11 -- 1.62 -- -- -- -0.0718 16.3 -- -- -- --
191.19 0.646 11 -- -- 1.43 -- -- -0.242 -- 24.05 1265 -- --
244.07 0.729 10.9 -- -- -- -- -- -0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.65 temperature 10.0 270 > th dose dependent rect. 1 6
2 41.99 temperature 10.0 270 > th dose dependent rect. 3 2
4 42.23 temperature 10.0 90 > th dose dependent rect. 3 5
7 42.48 wind 5.0 270 < th dose independent rect. 3 2
10 42.58 precipitation 0.1 270 < th dose independent rect. 3 2
11 42.58 precipitation 0.1 270 < th dose dependent rect. 3 2
13 42.71 wind 5.0 270 < th dose independent rect. 1 6
14 42.74 radiation 20.0 90 < th dose independent rect. 3 6
15 42.75 wind 5.0 90 < th dose independent rect. 3 5
16 42.80 wind 9.0 90 < th dose dependent rect. 3 5
22 43.03 radiation 40.0 90 < th dose dependent rect. 3 6
23 43.05 wind 9.0 270 < th dose dependent rect. 3 2
24 43.06 precipitation 0.1 90 < th dose independent rect. 3 5
25 43.06 precipitation 0.1 90 < th dose dependent rect. 3 5
30 43.21 temperature 10.0 270 > th dose independent rect. 3 2
32 43.21 temperature 30.0 270 < th dose independent rect. 3 2
33 43.21 humidity 50.0 270 > th dose independent rect. 3 2
36 43.21 atmosphere 995.0 270 > th dose independent rect. 3 2
37 43.21 atmosphere 1010.0 270 < th dose independent rect. 3 2
39 43.21 radiation 20.0 270 < th dose independent rect. 3 2
43 43.21 temperature 10.0 270 > th dose independent rect. 5 22
44 43.21 radiation 40.0 270 < th dose dependent rect. 3 2
45 43.22 radiation 20.0 270 < th dose dependent rect. 3 2
47 43.23 radiation 1.0 270 < th dose independent rect. 3 2
56 43.35 precipitation 0.1 90 < th dose independent rect. 8 19
57 43.35 precipitation 0.1 90 < th dose dependent rect. 8 19
58 43.36 precipitation 0.1 270 < th dose independent rect. 1 6
59 43.36 wind 9.0 270 < th dose independent rect. 5 22
60 43.36 precipitation 0.1 270 < th dose dependent rect. 1 6
65 43.39 radiation 30.0 270 < th dose dependent rect. 1 8
68 43.42 humidity 60.0 90 > th dose dependent rect. 21 6
69 43.44 wind 9.0 270 < th dose dependent rect. 1 6
74 43.51 temperature 10.0 90 > th dose independent rect. 3 5
76 43.51 temperature 30.0 90 < th dose independent rect. 3 5
77 43.51 humidity 50.0 90 > th dose independent rect. 3 5
79 43.51 atmosphere 995.0 90 > th dose independent rect. 3 5
80 43.51 atmosphere 1015.0 90 < th dose independent rect. 3 5
83 43.51 temperature 10.0 90 > th dose independent rect. 8 19
84 43.52 temperature 10.0 10 > th dose dependent rect. 3 6
89 43.55 radiation 10.0 270 < th dose independent rect. 1 6
96 43.62 wind 9.0 90 < th dose independent rect. 8 19
105 43.72 wind 7.0 10 < th dose dependent rect. 3 6
108 43.73 radiation 40.0 90 < th dose dependent rect. 3 8
112 43.75 humidity 70.0 270 > th dose independent rect. 1 6
121 43.79 temperature 10.0 270 > th dose independent rect. 1 6
123 43.79 temperature 30.0 270 < th dose independent rect. 1 6
124 43.79 humidity 50.0 270 > th dose independent rect. 1 6
126 43.79 atmosphere 995.0 270 > th dose independent rect. 1 6
127 43.79 atmosphere 1015.0 270 < th dose independent rect. 1 6
143 43.90 radiation 1.0 270 < th dose dependent rect. 5 21
146 43.94 precipitation 0.1 270 < th dose independent rect. 5 22
147 43.94 precipitation 0.1 270 < th dose dependent rect. 5 22
148 43.96 temperature 15.0 270 > th dose independent rect. 14 16
158 44.02 humidity 50.0 270 > th dose dependent rect. 3 2
163 44.08 precipitation 0.1 10 < th dose independent rect. 3 6
165 44.08 precipitation 0.1 10 < th dose dependent rect. 3 6
206 44.27 temperature 10.0 270 > th dose independent rect. 6 20
208 44.28 wind 9.0 270 < th dose independent rect. 6 20
214 44.32 temperature 15.0 270 > th dose independent rect. 11 10
230 44.40 precipitation 0.1 270 < th dose independent rect. 6 20
231 44.40 precipitation 0.1 270 < th dose dependent rect. 6 20
266 44.45 wind 5.0 10 < th dose independent rect. 3 6
267 44.45 temperature 15.0 270 > th dose independent rect. 2 17
271 44.45 radiation 40.0 10 < th dose dependent rect. 4 18
298 44.60 precipitation 0.1 270 < th dose independent rect. 2 17
299 44.60 radiation 10.0 10 < th dose independent rect. 4 18
300 44.60 temperature 15.0 270 > th dose independent rect. 1 19
302 44.60 precipitation 0.1 270 < th dose dependent rect. 2 17
303 44.62 humidity 50.0 90 > th dose dependent rect. 3 6
322 44.72 temperature 15.0 270 > th dose independent rect. 24 22
329 44.77 wind 9.0 270 < th dose independent rect. 19 7
330 44.77 temperature 10.0 270 > th dose independent rect. 19 7
331 44.77 temperature 30.0 270 < th dose independent rect. 19 7
332 44.77 humidity 50.0 270 > th dose independent rect. 19 7
333 44.77 atmosphere 995.0 270 > th dose independent rect. 19 7
334 44.77 radiation 1.0 270 < th dose independent rect. 19 7
340 44.77 atmosphere 1015.0 270 < th dose independent rect. 2 17
341 44.77 humidity 60.0 270 > th dose dependent rect. 22 2
343 44.77 radiation 1.0 270 < th dose dependent rect. 19 7
351 44.79 radiation 40.0 90 < th dose dependent rect. 3 19
355 44.81 precipitation 0.1 10 < th dose independent rect. 9 18
357 44.81 radiation 20.0 90 < th dose independent rect. 3 19
360 44.81 precipitation 0.1 10 < th dose dependent rect. 9 18
366 44.83 atmosphere 995.0 90 > th dose independent rect. 8 19
387 44.92 temperature 10.0 10 > th dose independent rect. 3 6
389 44.92 temperature 30.0 10 < th dose independent rect. 3 6
390 44.92 humidity 50.0 10 > th dose independent rect. 3 6
392 44.92 atmosphere 995.0 10 > th dose independent rect. 3 6
393 44.92 atmosphere 1015.0 10 < th dose independent rect. 3 6
394 44.92 temperature 10.0 10 > th dose independent rect. 9 18
397 44.93 precipitation 0.1 270 < th dose independent rect. 19 7
399 44.93 precipitation 0.1 270 < th dose dependent rect. 19 7
418 45.00 temperature 10.0 270 > th dose dependent rect. 14 16
419 45.01 radiation 40.0 10 < th dose independent rect. 3 6
420 45.01 wind 9.0 270 < th dose independent rect. 2 17
423 45.02 atmosphere 1015.0 270 < th dose independent rect. 11 10
440 45.04 radiation 40.0 90 < th dose independent rect. 3 19
451 45.12 wind 9.0 10 < th dose independent rect. 9 18
466 45.14 temperature 30.0 90 < th dose dependent rect. 21 6
474 45.17 wind 1.0 270 > th dose independent rect. 3 1
494 45.22 wind 9.0 270 < th dose independent rect. 20 5
496 45.22 precipitation 0.1 90 < th dose independent rect. 21 6
499 45.22 precipitation 0.1 90 < th dose dependent rect. 21 6
502 45.23 temperature 10.0 270 > th dose independent rect. 20 5
503 45.23 temperature 30.0 270 < th dose independent rect. 20 5
504 45.23 humidity 50.0 270 > th dose independent rect. 20 5
507 45.23 atmosphere 995.0 270 > th dose independent rect. 20 5
508 45.23 radiation 1.0 270 < th dose independent rect. 20 5
516 45.23 atmosphere 1015.0 270 < th dose independent rect. 1 19
517 45.23 atmosphere 995.0 90 > th dose dependent rect. 22 5
518 45.23 radiation 1.0 270 < th dose dependent rect. 20 5
606 45.33 atmosphere 1005.0 270 > th dose independent rect. 3 2
608 45.33 precipitation 0.1 270 < th dose independent rect. 6 9
609 45.33 radiation 40.0 270 < th dose independent rect. 15 15
613 45.33 precipitation 0.1 270 < th dose dependent rect. 6 9
625 45.36 humidity 50.0 270 > th dose dependent rect. 1 6
630 45.38 temperature 10.0 270 > th dose independent rect. 6 9
631 45.38 atmosphere 1015.0 270 < th dose independent rect. 6 9
685 45.47 atmosphere 995.0 270 > th dose independent rect. 6 8
690 45.47 atmosphere 1015.0 270 < th dose independent rect. 14 16
692 45.47 atmosphere 995.0 10 > th dose dependent rect. 22 6
703 45.48 wind 9.0 270 < th dose independent rect. 6 9
715 45.49 atmosphere 1005.0 90 > th dose independent rect. 3 5
726 45.51 precipitation 0.1 270 < th dose independent rect. 15 15
728 45.51 precipitation 0.1 270 < th dose dependent rect. 15 15
730 45.52 atmosphere 995.0 270 > th dose dependent rect. 22 2
740 45.54 humidity 50.0 10 > th dose dependent rect. 22 6
749 45.56 atmosphere 995.0 270 > th dose dependent rect. 3 2
791 45.60 atmosphere 995.0 90 > th dose dependent rect. 3 5
808 45.63 wind 1.0 270 > th dose independent rect. 2 3
821 45.64 wind 9.0 270 < th dose independent rect. 15 15
848 45.67 temperature 10.0 270 > th dose independent rect. 21 14
849 45.67 atmosphere 995.0 270 > th dose independent rect. 21 14
858 45.68 humidity 50.0 270 > th dose independent rect. 21 14
864 45.70 temperature 30.0 10 < th dose dependent rect. 22 6
883 45.73 radiation 40.0 10 < th dose dependent rect. 4 5
889 45.75 atmosphere 1000.0 10 > th dose independent rect. 22 6
895 45.77 wind 9.0 270 < th dose independent rect. 21 14
928 45.83 wind 9.0 90 < th dose dependent rect. 21 6
959 45.87 radiation 1.0 270 < th dose dependent rect. 12 14
968 45.89 radiation 40.0 10 < th dose independent rect. 4 18
974 45.91 wind 1.0 270 > th dose independent rect. 1 6